Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq1998 253 2e-62 seq14 154 2e-32 seq287 145 8e-30 seq151 125 7e-24 seq560 113 5e-20 seq3 91.5 2e-13 >seq1998 Length=1172 Score = 253 bits (280), Expect = 2e-62 Identities = 294/394 (75%), Gaps = 2/394 (1%) Strand=Plus/Minus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATTAC 8348 || |||||||| ||| | |||||||| || || ||| |||| || | || |||| Sbjct 393 GGATGGTTTGGTGTTTTGATGATCCCTACT-TTATTGACCGCAACTTCTGTATTTATTAT 335 Query 8349 CGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATC 8408 ||| ||| ||||||| ||||| || || || || || || || ||||| ||| ||||||| Sbjct 334 CGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 275 Query 8409 TCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGG 8468 ||| | || || ||||| || || |||||||| || |||| | ||| || || || Sbjct 274 TCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGG 215 Query 8469 CCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGG 8528 | || || ||||| || |||||||| || ||| ||||||| ||| | ||||| || || Sbjct 214 TTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGG 155 Query 8529 TCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGA 8588 |||||| |||| | ||| | |||||| | ||||| || | ||| ||||||||||| Sbjct 154 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA 95 Query 8589 ATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCC 8648 ||||||||| || ||| || || ||||| |||||||| ||||||||| || ||||| Sbjct 94 GTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCC 35 Query 8649 TGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTAT 8682 |||||| |||||| ||||||| ||| | ||||| Sbjct 34 TGTTGCAGCTGCTACTGCTGTTTTCTTGATCTAT 1 >seq14 Length=24855542 Score = 154 bits (170), Expect = 2e-32 Identities = 183/248 (74%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 10484 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 10543 ||||||| ||||| || ||||| ||||| || |||||||| || | || || || ||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 10544 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 10603 || |||||||| | |||||| ||| | |||||||||||| | |||||||| || | | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 10604 GGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGAT 10663 ||| | |||| || | ||| | | ||||| |||| ||| | ||||| || || Sbjct 952085 GGTTTATGGATGAGCGCTCTCGGATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGAC 952026 Query 10664 TTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAG 10723 || || ||||| | ||| | || |||||||||||||||||||||| ||||| | || Sbjct 952025 TTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAA 951966 Query 10724 AATATCCT 10731 ||||| || Sbjct 951965 AATATTCT 951958 >seq287 Length=58314 Score = 145 bits (160), Expect = 8e-30 Identities = 176/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8574 TTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGT 8633 ||| ||||||||||| ||||||||| || || || | ||| |||||||||| | ||| Sbjct 44655 TTACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGT 44596 Query 8634 TGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCA 8693 |||||| || |||| |||||| ||||| | || ||| | ||||||| ||||| | Sbjct 44595 TGCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTA 44536 Query 8694 AGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGT 8753 || || ||| || | ||||| || || | || || ||||||| ||| |||| Sbjct 44535 GGGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGT 44476 Query 8754 CTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGT 8813 ||| ||||||||||||||||||| |||||||| || ||||| | || || |||||| Sbjct 44475 ATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGT 44416 Score = 136 bits (150), Expect = 4e-27 Identities = 368/560 (66%), Gaps = 16/560 (3%) Strand=Plus/Minus Query 8500 TCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTC 8559 ||| ||||||| ||| | ||||| | | |||||| | || | ||| ||| | Sbjct 18181 TCTATTGATGAATGGTTATACAATGACGATCCTTAAGAACTAATTGTTCAATTCTTTTTA 18122 Query 8560 CTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGT 8619 ||| | || | ||| || ||| |||| ||| ||||| || | || | ||| || Sbjct 18121 CTTAGTGTAGCTTGTTACATAGGTGGTGAGTGGCAACTTAATTTTTGACTGAGTATGTGT 18062 Query 8620 CCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTC 8679 |||||||| | ||||||||| || |||| |||||| || || | ||| ||| | || Sbjct 18061 CCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTACTATTATTGTTTTCTTGATC 18002 Query 8680 TATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTC 8739 ||||| |||| | || | || ||| || |||||||||| || | || | || ||| Sbjct 18001 TATCCAATTGGCTAGGGATGTTTTTCTTATAGTATGCCTCTAGGAAGCTTTGATATTTTC 17942 Query 8740 AACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTT 8799 |||| || | |||| ||| || |||||||||||||||| || ||||| || ||||| Sbjct 17941 AACTTTAGGATTGTATTCTAGACTGAGCACAACATCCTTATACACCCATTTCACATATCA 17882 Query 8800 GGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTC--CGCAATGCATGGTTCACTCGTTA 8857 || || || | | ||| | ||| || |||||| |||| | | | Sbjct 17881 GGCGT--------AATTACACCAACTTCT-TATTCAGTGCTATGCATCGTTCCTTGATAA 17831 Query 8858 CTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTC- 8916 | ||| || | || ||||| ||| | || || | | |||| ||| Sbjct 17830 CCTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCGCTAATGAAAGTTACATATTCA 17771 Query 8917 GGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATC 8976 | | |||| || ||||||| || || | || |||||||| || ||||| || |||| | Sbjct 17770 GTTAAAGAGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAAC 17711 Query 8977 TTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCCT 9036 ||||||| || ||| ||||| ||| || ||||| ||||| | ||| |||||| Sbjct 17710 TTCCAAT----ATATTTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCT 17655 Query 9037 GTGGTGGGAATCTGGTTTAC 9056 | || || || | |||||| Sbjct 17654 ATAGTAGGTATTTAGTTTAC 17635 >seq151 Length=113734 Score = 125 bits (138), Expect = 7e-24 Identities = 402/618 (65%), Gaps = 23/618 (4%) Strand=Plus/Minus Query 8500 TCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTC 8559 ||| ||||||| ||||| ||||| | |||||| | || | ||| |||| | Sbjct 4933 TCTGTTGATGAATGGCTATACAATGACTATCCTTAAGAACTAATTGTTCAATACTTTTTA 4874 Query 8560 CTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGT 8619 ||| | || | ||| || ||| ||| ||| ||||| || | | | ||| || Sbjct 4873 CTTAGTGTAGCTTGTTACATAGGTGATGAGTGGCAACTTAATTTTTGACCGAGTATGTGT 4814 Query 8620 CCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTC 8679 |||||||| | ||||||||| || |||| |||||| |||| | ||| ||| | || Sbjct 4813 CCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTGCAATTATTGTTTTCTTGATC 4754 Query 8680 TATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTC 8739 ||||| ||||| | || || ||| || |||||||||| || | | |||| ||| Sbjct 4753 TATCCAATTGGTTAGGGAAGTTTTTCTTATAGTATGCCTCTAGGAAGTTTTGGTATTTTC 4694 Query 8740 AACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTT 8799 |||| |||| |||| ||| || || ||||||||||||| | ||||| || ||||| | Sbjct 4693 AACTTTATGATTGTATTCTAGACTAAGCACAACATCCTTGTACACCCATTTCACATATTA 4634 Query 8800 GGTGTTGCTGGTGTCTTCGGCGGATCTCTCTT-TTC--CGCAATGCATGGTTCACTCGTT 8856 || | | | | | | || |||| ||| || |||||| |||| | | Sbjct 4633 GGCG----TAATTACAAC-----AACT-TCTTATTCAATGCTATGCATCGTTCCTTGATA 4584 Query 8857 ACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTC 8916 || ||| || | || ||||| ||| | || || | | |||| ||| Sbjct 4583 ACCTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCGCTAATGAAAGTTACAGATTC 4524 Query 8917 GGTCAAGAAGAGG----AAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGCTT 8972 || | |||||| ||||||| || || | || |||||||| || ||||| || || Sbjct 4523 AGTTA--AAGAGGAAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATT 4466 Query 8973 GATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTG 9032 || |||||||| | ||| ||||| ||| || ||||| ||||| | ||| || Sbjct 4465 GAACTTCCAAT----GTATTTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTG 4410 Query 9033 GCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAACCTCAA 9092 |||| | || || || | |||||| ||| | | ||| |||| ||||| || Sbjct 4409 GCCTATAGTAGGTATTTAGTTTACTATTTTCGATATTAGCATTATGTCTTTTAACCTAAA 4350 Query 9093 TGGCTTCAACTTCAACCA 9110 || || || |||||||| Sbjct 4349 TGATTTTAATTTCAACCA 4332 >seq560 Length=20368 Score = 113 bits (124), Expect = 5e-20 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 8646 TCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTC 8705 ||||||||| |||||| ||||| | ||| | ||||||| ||||||| || || || Sbjct 20252 TCCTGTTGCAGCTGCTACTGCTCTTTTCTTGATCTATCCAATTGGTCAGGGAAGCTTTTC 20311 Query 8706 TGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGC 8762 ||||||||||||||| || ||||| ||||| ||||||| |||| |||| |||||||| Sbjct 20312 TGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGC 20368 >seq3 Length=29412403 Score = 91.5 bits (100), Expect = 2e-13 Identities = 227/346 (66%), Gaps = 24/346 (7%) Strand=Plus/Plus Query 8479 TACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAG 8538 || || || ||||||| || ||| ||||||| | | | ||||| ||| | |||| || Sbjct 11375250 TATCCAATATGGGAAGTGGCATCTATTGATGAATAGTTATACAATTGTGATGCTTATGAG 11375309 Query 8539 CTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAA--C 8596 || | ||| | |||||| ||| |||||||| | |||||| | Sbjct 11375310 CTAATTGTTCTACACTTC-----------------TTACATGGGTCGCAAGTGGGAAAAC 11375352 Query 8597 TTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCG 8656 | || | || | |||| ||||||||| ||||||||| || | ||| |||| Sbjct 11375353 CTAGTTTTTGTCTAGTTATGCTTCCTTGGATTGTTGTTGCATATTCAGTACCTATTGCA- 11375411 Query 8657 CTGCTTCTGCTGTATTCCTTG-TCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATG 8715 || ||||||| | ||| ||||||| ||| ||| | || || ||| |||| Sbjct 11375412 ---CTACTGCTGTTGTTATTGATCTATCCAATTGATCAGAGAAGCTTTTCAAATGTTATG 11375468 Query 8716 CCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATC 8775 |||| | ||||| || | ||||||| |||| | | ||| | ||| | ||||||||| Sbjct 11375469 CCTCCCGAAATCTCTAGTGCATTCAACTTTATGATCGCATTCTAAGCTAATCACAACATC 11375528 Query 8776 CTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCG 8821 || || |||| || ||||| | || || ||| |||| | | ||| Sbjct 11375529 CTTATTTACCCATTTCACATATTAGGCGTAGCTAGTGTATACCGCG 11375574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516466965336000