Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq1998 269 3e-67 seq287 165 9e-36 seq151 161 1e-34 seq14 150 2e-31 seq11 93.3 5e-14 >seq1998 Length=1172 Score = 269 bits (298), Expect = 3e-67 Identities = 325/437 (74%), Gaps = 4/437 (1%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || ||||||||| | |||||||| || ||||| ||||| |||| ||||| || || || Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 160936 ATGATTCCCTGCTTGCTCG-CTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTC 160993 ||||| |||| ||| | | | || || | ||| || || || || ||| ||| ||| | Sbjct 375 ATGAT-CCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCC 318 Query 160994 CCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 161053 | || || || || || || ||||||||||| || |||| || || | |||||||||| Sbjct 317 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 258 Query 161054 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 161113 | || || |||||||| |||| ||| ||||| ||||| ||| |||| || ||||| | Sbjct 257 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAA 198 Query 161114 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 161173 | |||||||| ||| | | || |||||| | ||||| || ||||||| | || ||| Sbjct 197 TATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 138 Query 161174 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 161233 | | |||||| | |||| | | ||||||||||||||||||||||||| || || Sbjct 137 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 78 Query 161234 GTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 161293 ||||||| ||||| ||||||||| || ||||| || |||||||| || || || | || Sbjct 77 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 18 Query 161294 CAGTGTTCCTGGTCTAT 161310 | || ||| || ||||| Sbjct 17 CTGTTTTCTTGATCTAT 1 >seq287 Length=58314 Score = 165 bits (182), Expect = 9e-36 Identities = 573/883 (65%), Gaps = 42/883 (5%) Strand=Plus/Minus Query 160872 ACAGTTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGT 160931 ||| || ||||||||| | |||| ||| || ||| | | || || ||||| || | Sbjct 18437 ACATTTCTGTAACTGGATAACCAACACTGAAAACGTCTTCTACATTTTATGGTTTGGTAT 18378 Query 160932 CCTGATGATTCCCTGCTTGCTCG-CTGCTACCATTTGT---TTCATCATTGCCTTCGTTG 160987 |||||| |||| ||| | | | || || | || | || || ||||| ||| || Sbjct 18377 TTTGATGAC-CCCTACTTTATAGACCGC-ACAACTTCTATATTTATTATTGCATTCATTA 18320 Query 160988 GTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATG 161047 ||||||||| | | || | || ||||||||||| || | | || || | |||| Sbjct 18319 ATGCTCCCCCGATAAATATTAATGGTATTCGTGAACCTGTTTTTAGATCTCTACTTTATG 18260 Query 161048 GAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAAC------GCTATCGGTCTGC 161101 ||| || || || ||| || | |||| ||| ||||| ||||| ||| || Sbjct 18259 CAAATAATATTATTTCTAGTATTATTATTCCTACTTCTGCTTCTGCAGCTATAGGTTGGC 18200 Query 161102 ACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTT 161161 | || ||| | |||| || | | || |||||| | ||||| | | ||||| Sbjct 18199 ATTTTTACTCAATCTAGGTC--------TATTGATGAATGGTTATACAATGACGATCCTT 18148 Query 161162 TCCAACTCGTTGTG---TTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGT 161218 |||| |||| ||| || || | || | || || |||||| ||| |||||| Sbjct 18147 AAGAACTAATTGTTCAATTCTTTTTACTTAGTGT-AGCT-TG-TTACATAGGTGGTGAGT 18091 Query 161219 GGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTG 161278 || ||||| || | ||| | ||| |||||||||||| || ||||| || |||| || Sbjct 18090 GGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTG 18031 Query 161279 TCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATG 161338 | || | | | | || ||| || ||||||| | || | || | ||| ||| || Sbjct 18030 TTGCAACTACTATTATTGTTTTCTTGATCTATCCAATTGGCTAGGGATGTTTTTCTTATA 17971 Query 161339 CAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACA 161398 |||||||| || | || || || ||||||| | | |||| ||| | | ||||||| Sbjct 17970 GTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATTGTATTCTAGACTGAGCACA 17911 Query 161399 ACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGC--GGTTCTCT 161456 |||| || || ||||| || || || |||||| || | |||| | Sbjct 17910 ACATCCTTATACACCCATTTCACATATCAGGCGTA--------ATTACACCAACTTCT-T 17860 Query 161457 GTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAA 161516 |||||||| ||||| |||| || | |||||| || | |||||||| |||| Sbjct 17859 ATTCAGTGCTATGCATCGTTCCTTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAA 17800 Query 161517 CGAGTCCCAGAACTATGGTTACAAGTTC-GGTCAAGAAGAAGAGACCTACAACATCGTTG 161575 | ||| || | |||||| ||| | | |||| ||| | || || || ||| | | Sbjct 17799 TAAATCCGCTAATGAAAGTTACATATTCAGTTAAAGAGGAAAAAACTTATAATATCATAG 17740 Query 161576 CTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCT 161635 |||| || || || || || || ||| |||||||| | ||||||||||| | | Sbjct 17739 CTGCTCATGGTTATTTTGGCCGATTGAACTTCCAATA----TATTTCAACAACTCTCATT 17684 Query 161636 CGCTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCG 161695 | | || || ||||| | |||||||||| | || || || | ||| ||| | | Sbjct 17683 CTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTAGTTTACTATTTTAGATA 17624 Query 161696 TAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCA 161738 | |||| ||| | || | ||| |||| ||| | |||||||| Sbjct 17623 TTAGCATTATGTCTTTTAGCCTAAATGATTTTGATTTCAACCA 17581 Score = 123 bits (136), Expect = 3e-23 Identities = 315/476 (66%), Gaps = 14/476 (3%) Strand=Plus/Minus Query 160969 TTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTC 161028 || || ||||| ||| | ||||||||| | | || | || ||| |||||| || Sbjct 44880 TTTATTATTGCTTTCATCACTGCTCCCCCAATAAATATTAATGGTATTTTTGAACCTGTT 44821 Query 161029 GCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAAC 161088 | | || || | |||| ||| || || || ||| || | |||| ||| ||||| Sbjct 44820 TTTAGATCTCTACTTTATGCAAATAATATTATTTCTAGTATTATTATTCCTACTTCTGCA 44761 Query 161089 GCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTAC 161148 ||||| ||| ||| || || | || |||| | | || |||||| | ||| Sbjct 44760 GCTATAGGTTGGCATTTTAACTCAATTTGGGTC--------TATTGATGAATGGTTATAC 44709 Query 161149 AACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTC---CTGATTGGCATCTATGCTTAC 161205 || | | ||| |||| |||| ||||| || | || | || || |||| Sbjct 44708 AAAGACAATGCTTATGAACTAATTGTTCAACACTTTTAACTTAGTGT-AGCT-TG-TTAC 44652 Query 161206 ATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCA 161265 ||||||||||||||||||||| || || || | ||| |||||||||||| || ||| Sbjct 44651 ATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTTGCA 44592 Query 161266 TACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGT 161325 || || |||| ||| || | || | | || ||| || ||||||| | ||| | || Sbjct 44591 TATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAGGGA 44532 Query 161326 TCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTC 161385 || ||| || ||||| || || | || | || ||||||| || |||| ||| Sbjct 44531 AGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTATTC 44472 Query 161386 CAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGT 161441 | || ||||||||||| || |||||||| || || || | |||||| ||||| Sbjct 44471 TAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGT 44416 >seq151 Length=113734 Score = 161 bits (178), Expect = 1e-34 Identities = 568/881 (64%), Gaps = 37/881 (4%) Strand=Plus/Minus Query 160872 ACAGTTTTGTAACTGGGTCACCAGCACCGACAACCGCCTT-TATGTTGGTTGGTTCGGCG 160930 ||| || ||||| ||| | |||| ||| | ||||||||| || ||| ||||| || Sbjct 5189 ACATTTCTGTAATTGGATAACCAACACTAA-AACCGCCTTCTACATTGTATGGTTTGGTA 5131 Query 160931 TCCTGATGATTCCCTGCTTGCTCGCTGCTACCATTTGT---TTCATCATTGCCTTCGTTG 160987 | ||||||| |||| ||| | | || | || | || || ||||| ||| || Sbjct 5130 TTTTGATGAT-CCCTACTTTATTGACCACACAACTTCTATATTTATTATTGCATTCATTA 5072 Query 160988 GTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATG 161047 ||||||||| | |||| | || ||||||||||| || | | || || | |||| Sbjct 5071 ATGCTCCCCCGATAAACATTAATGGTATTCGTGAACCTGTTTTTAGATCTCTACTTTATG 5012 Query 161048 GAAACAACATCATCTCTGGTGCTGTTATCC------CTTCTTCTAACGCTATCGGTCTGC 161101 ||| || || || ||| || | |||| | || ||||| ||||| ||| || Sbjct 5011 CAAATAATATTATTTCTAGTATTATTATTCTTACTTCTGCTTCTGCAGCTATAGGTTGGC 4952 Query 161102 ACTTCTACCCCATCTGGGAAGCAGCAAGTCTG--GACGAATGGCTCTACAACGGTGGTCC 161159 | || ||| | |||||| |||| || |||||||| ||||| | ||| Sbjct 4951 ATTTTTACTCAATCTGGC----------TCTGTTGATGAATGGCTATACAATGACTATCC 4902 Query 161160 TTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTG 161219 || |||| |||| |||| | || | | | |||||| ||| |||||| Sbjct 4901 TTAAGAACTAATTGTTCAATACTTTTTACTTAGTGTAGCTTGTTACATAGGTGATGAGTG 4842 Query 161220 GGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGT 161279 | ||||| || | | | | ||| |||||||||||| || ||||| || |||| ||| Sbjct 4841 GCAACTTAATTTTTGACCGAGTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGT 4782 Query 161280 CGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGC 161339 || | || | | || ||| || ||||||| | ||| | || ||| ||| || Sbjct 4781 TGCAACTGCAATTATTGTTTTCTTGATCTATCCAATTGGTTAGGGAAGTTTTTCTTATAG 4722 Query 161340 AATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAA 161399 |||||||| || | | ||||| ||||||| ||| |||| ||| | | ||||||| Sbjct 4721 TATGCCTCTAGGAAGTTTTGGTATTTTCAACTTTATGATTGTATTCTAGACTAAGCACAA 4662 Query 161400 CATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTT 161459 ||| || | ||||| || || || | |||||| | |||| | || Sbjct 4661 CATCCTTGTACACCCATTTCACATATTAGGCGTA------ATTACAACAACTTCT-TATT 4609 Query 161460 CAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGA 161519 || ||| ||||| |||| || | |||||| || | |||||||| |||| | Sbjct 4608 CAATGCTATGCATCGTTCCTTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAATAA 4549 Query 161520 GTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAG--AAGAGACCTACAACATCGTTGCT 161577 ||| || | |||||| ||| || || || || | || || || ||| | ||| Sbjct 4548 ATCCGCTAATGAAAGTTACAGATTCAGTTAAAGAGGAAAAAAACTTATAATATCATAGCT 4489 Query 161578 GCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCG 161637 || || || || || || || ||| ||||||| | ||||||||||| | || Sbjct 4488 GCTCATGGTTATTTTGGCCGATTGAACTTCCAAT----GTATTTCAACAACTCTCATTCT 4433 Query 161638 CTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTA 161697 | || || ||||| | |||||||||| | || || || | ||| ||| | | | Sbjct 4432 TTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTAGTTTACTATTTTCGATATT 4373 Query 161698 AGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCA 161738 |||| ||| | || ||||| |||| ||| || |||||||| Sbjct 4372 AGCATTATGTCTTTTAACCTAAATGATTTTAATTTCAACCA 4332 >seq14 Length=24855542 Score = 150 bits (166), Expect = 2e-31 Identities = 179/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 162795 GAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCT 162854 |||||||| ||||| ||||| || || |||||||| | || || || || || ||||| Sbjct 952196 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTTGGGGTTGCT 952137 Query 162855 TTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGG 162914 ||| | || | |||||| |||||||||||| | ||||| || || | |||| | ||| Sbjct 952136 TTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACGGGTTTATGG 952077 Query 162915 ACAAGTTCTATCGGTATTA-TTGGACTCGCTCTCAATCTTCGTGCTTACGACTTTGTATC 162973 | || || |||| |||| | || || |||| ||| | ||||| || ||||| || || Sbjct 952076 ATGAGCGCTCTCGG-ATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGACTTCGTTTC 952018 Query 162974 TCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCT 163033 ||| || | ||||| |||||||| ||||| |||||||| ||||| | || || ||||| Sbjct 952017 TCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAAAATATTCT 951958 >seq11 Length=27369018 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 158340 GTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGG 158399 ||||||||| || || |||||| | || || || || || ||||| ||| | || || Sbjct 27029555 GTACATCCTAGATGCGGCTGAGAATGCAGGAGTTGAGCTACCCTACTCTTGCAGGGCTGG 27029614 Query 158400 CGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTC 158459 ||||| || | ||||| || || | || || ||| | || || ||| || || Sbjct 27029615 AGCTTGCTCTACTTGTGCTGGGAAGATGGTGTCAGGCTCAGTTGATCAATCTGATGGTTC 27029674 Query 158460 CTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTAC 158519 ||||||||| || | ||||| || |||| | ||||||||||||||||| || || Sbjct 27029675 CTTCCTGGATGAGAATCAAATGGAGGGGGGTTATCTGCTGACTTGTGTTTCTTACCCAAC 27029734 Query 158520 AAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACT 158558 |||||||| ||| | || ||||||| | ||||| Sbjct 27029735 TTCAGATTGTGTTATTCACACGCACAAGGAGGGTGAACT 27029773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547733376230040