Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq1998 239 1e-58 seq287 104 7e-18 >seq1998 Length=1172 Score = 239 bits (264), Expect = 1e-58 Identities = 302/415 (73%), Gaps = 0/415 (0%) Strand=Plus/Plus Query 18405 GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAA 18464 |||||||| || || || ||||| |||||| |||||| ||||||||||| || | || Sbjct 23 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 82 Query 18465 CTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATG 18524 ||||||||||| | || ||||||||| || | || | | ||||| | ||||| Sbjct 83 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 142 Query 18525 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 18584 || | ||| || || || || |||||||| || || | | ||| |||||||| |||||| Sbjct 143 AGCTCATAAGGACCGCCATTGTATAACCATTCATCAACAGATGCCGCTTCCCATATTGGG 202 Query 18585 TAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTT 18644 || || || | ||| || || ||| | || | || || || || || || |||||| Sbjct 203 TAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTT 262 Query 18645 CCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCA 18704 ||||| |||| | ||| || ||||| |||||||||||||| || || || ||||| ||| Sbjct 263 CCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGGGCA 322 Query 18705 GCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACC 18764 |||| || || || | |||| | | || |||||| || | | ||||||||| | || Sbjct 323 GCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACA 382 Query 18765 CCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAAAC 18819 |||||||| || | ||| || ||||| | || || || | ||||| ||| |||| Sbjct 383 CCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAAAC 437 >seq287 Length=58314 Score = 104 bits (114), Expect = 7e-18 Identities = 161/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 18270 ATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAA 18329 || || || || ||||||||||| ||||| || || | |||||| | || || |||||| Sbjct 44434 ATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATTATAAAGTTGAAA 44493 Query 18330 GTACCGCTAA---TACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA- 18385 || ||| | || || ||||| | || ||| || || || | |||| ||||| Sbjct 44494 ATA---TTAAAGGTTCCTAGGGGCATGCTATTAGAAAAGCTTCCCTAACCAATTGGATAG 44550 Query 18386 AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGG 18445 | | ||||| || | |||| ||| || | || ||||| |||||| ||||||| || Sbjct 44551 ATCAAGAAA-ACCATAATAGCAGTTGCAACATGAGCTGAATATGCAACAAAAATCCAAGG 44609 Query 18446 GCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 | ||||| ||||| | || |||||||||| | || ||||||||| Sbjct 44610 ACACATACTTAGTCGAAAATTAAGTTCCCACTCACGACCCATGTAA 44655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151314772046786