Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq1998 219 5e-52 seq14 154 2e-32 seq11 109 7e-19 seq7 100 4e-16 seq10 82.4 1e-10 >seq1998 Length=1172 Score = 219 bits (242), Expect = 5e-52 Identities = 295/408 (72%), Gaps = 2/408 (0%) Strand=Plus/Plus Query 103724 TAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAG 103783 |||| |||||| || || | ||||| ||||||||||| || ||||| ||| ||||| Sbjct 2 TAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAA 61 Query 103784 GGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAGATGCCA 103843 |||||||| ||||||||| | | |||||||||||| ||||| || | | ||| Sbjct 62 GGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCA 121 Query 103844 ATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGA 103903 | | |||||| | || | || | ||||||| || || || | ||| ||||||| | Sbjct 122 AGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACA 181 Query 103904 GATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACAACT 103963 ||||| |||||||| || || || || || | ||| || || || | |||| || Sbjct 182 GATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATG 241 Query 103964 GCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCG 104023 |||||||| || || ||||| || || | || || |||| || ||||||||||| || Sbjct 242 GCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCA 301 Query 104024 TCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGTTGCCGCCAA 104082 || ||||| || ||||| || || | |||||| | || || |||| ||||| | ||| Sbjct 302 TCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAA 360 Query 104083 CAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTT 104130 | ||| |||||||||| ||||| ||||| |||| || |||||||| Sbjct 361 TAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 408 >seq14 Length=24855542 Score = 154 bits (170), Expect = 2e-32 Identities = 187/252 (74%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 101803 AATAGGATGTTCTTTGTGTAGAACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCT 101862 || || || || || ||||||| ||||| || || |||||||||||||| | ||| | Sbjct 951955 AAGAGAATATTTTTAATGTAGAAAGTCTCAAATTCAGGATCTTCTGCTGCACGGATTTTC 952014 Query 101863 TGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACC-AATAATACCGATGGAACT 101921 || || || |||||||| ||||| | || |||| ||||| | |||| |||| | || Sbjct 952015 TGAGAAACGAAGTCATAGGCACGTAAATTTAGAGTCAGACCGACTAAT-CCGAGAGCGCT 952073 Query 101922 TGTCCACAGACCCATAACAGGAACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACT 101981 |||| | |||| | || || ||||| | |||||||||||| ||||| |||| Sbjct 952074 CATCCATAAACCCGTTACTGGTACAAATAACATAAAGAAATGTAACCAATGTTTATCGGA 952133 Query 101982 AAATGCAATACCAAAGATTTGAGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTC 102041 ||| |||| |||||||||||| || | || ||||| || || |||||||||||||| || Sbjct 952134 AAAAGCAACCCCAAAGATTTGAAACTAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTC 952193 Query 102042 TTCCTCTTGTGT 102053 ||| |||| || Sbjct 952194 TTCAGCTTGAGT 952205 >seq11 Length=27369018 Score = 109 bits (120), Expect = 7e-19 Identities = 148/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 102805 GACTACCACA-TCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTT 102863 || || |||| || ||||||||||| | || || ||||| | | |||| | || | || Sbjct 27029751 GAATAACACAATCTGAAGTTGGGTAAGAAACACAAGTCAGCAGATAACCCCCCTCCATTT 27029692 Query 102864 GATCGTCATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAG 102923 ||| |||||||| ||||| ||| |||||| || | || || | ||||| |||| Sbjct 27029691 GATTCTCATCCAGGAAGGAACCATCAGATTGATCAACTGAGCCTGACACCATCTTCCCAG 27029632 Query 102924 CACAAGTAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAG 102983 |||||||||| || || ||||| | || || || || || ||||| ||||| | |||| Sbjct 27029631 CACAAGTAGAGCAAGCTCCAGCCCTGCAAGAGTAGGGTAGCTCAACTCCTGCATTCTCAG 27029572 Query 102984 CAGCGTCTAGAATATATTGATCATC 103008 | || ||||| || || |||||| Sbjct 27029571 CCGCATCTAGGATGTACGTATCATC 27029547 >seq7 Length=27069033 Score = 100 bits (110), Expect = 4e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 102824 GGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGAT 102883 || || || || || || ||||| |||| |||||| || || || || |||||| | Sbjct 1887896 GGATAAGCAACACAAGTAAGAACCCAACCCTCTTCTACCTGTTCATCGTCAAGAAAGCTT 1887837 Query 102884 TGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACCA 102943 ||| |||||||| | || | | |||| || |||||||||| ||| || | |||| Sbjct 1887836 CCATCAGATTGATCTATGGCTCCTGCTACAATTTTCCCAGCACAAGAAGAGCAAGAACCA 1887777 Query 102944 GCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATATTGA 103003 || | || || || || ||||||||||| ||||| ||| |||||| || ||||| | Sbjct 1887776 GCCCTGCATGAGTATGGAAGATCAACACCAGCTTCTTCAAAAGCGTCGAGGATATAGACA 1887717 Query 103004 TCATC 103008 ||||| Sbjct 1887716 TCATC 1887712 >seq10 Length=26335333 Score = 82.4 bits (90), Expect = 1e-10 Identities = 142/205 (69%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 102805 GACTACCACA-TCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTT 102863 || || |||| || |||||||| || | |||||||| || ||| |||| ||| | || Sbjct 7997229 GAATAACACAATCTGAAGTTGGATAAGAGACGCAGGTAAGCACATAACCCTTTTCCATTT 7997288 Query 102864 GATCGTCATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAG 102923 | || || | ||||| || |||| ||| || |||| || | | | || || | Sbjct 7997289 GCTCCTCGTTGAGAAATGACCCATCTGATTGGTCCACAGATCCAGTAACCAGCTGCCCGG 7997348 Query 102924 CACAAGTAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAG 102983 |||||||||| || || ||||| | || || || ||||| || || ||||| | || | Sbjct 7997349 CACAAGTAGAGCAGGCCCCAGCTCTGCATGAGTATGGCAGCTCTACTCCTGCATTTTCTG 7997408 Query 102984 CAGCGTCTAGAATATATTGATCATC 103008 | ||||| || || || |||||| Sbjct 7997409 CTGCGTCGAGGATGTAAGTATCATC 7997433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633497611700520