Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq1998 190 6e-44 seq287 116 1e-21 seq151 89.7 2e-13 >seq1998 Length=1172 Score = 190 bits (210), Expect = 6e-44 Identities = 300/427 (70%), Gaps = 2/427 (0%) Strand=Plus/Plus Query 22028 GAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCAT 22087 ||| |||||||| ||||| || |||||||| || || |||||| ||||| || | ||| Sbjct 10 GAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCAT 69 Query 22088 CCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAA 22147 || || || | |||||||||||||| || ||||||||| | || |||| | ||| Sbjct 70 ACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAA 129 Query 22148 GTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGC 22207 ||| | || | || | | |||||||| ||||| | ||||||||||| | || || Sbjct 130 GTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACAGATGCCGC 189 Query 22208 TTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGA 22267 |||||| |||||||| || || | || || || | | |||| | ||| || || Sbjct 190 TTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGA 249 Query 22268 TATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTC 22327 || || ||||| ||||| | || || |||| || ||||| || || ||||| || || Sbjct 250 AATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATC 309 Query 22328 AACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACG 22386 || || || || ||| || ||||||||||| || || |||| ||| | | | | Sbjct 310 TACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTA-G 368 Query 22387 GAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGTAGAGGTGACCCAGG 22446 | ||||| | || || |||||||| | ||||||||||| | ||| ||| | |||| Sbjct 369 GGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGT 428 Query 22447 AACAAAA 22453 ||| || Sbjct 429 TACAGAA 435 >seq287 Length=58314 Score = 116 bits (128), Expect = 1e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 21906 ATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAG 21965 |||||||| || |||||||| || ||||||||||||| ||| || | || ||||||| Sbjct 44434 ATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATTATAAAGTTGAAA 44493 Query 21966 GTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACA 22025 | | | || | |||||| || |||||| |||| |||| ||||| | Sbjct 44494 ATATTAAAGGTTCCTAGGGGCATGCTATTAGAAAAGCTTCCCTAACCAATTGGATAGATC 44553 Query 22026 AGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTC 22085 | ||| || | | |||| || ||| |||| || || |||||||| ||||| || | | Sbjct 44554 AAGAAAACCATAATAGCAGTTGCAACATGAGCTGAATATGCAACAAAAATCCAAGGACAC 44613 Query 22086 ATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAA 22127 || | ||||||| | ||||||||||||| || ||||||||| Sbjct 44614 ATACTTAGTCGAAAATTAAGTTCCCACTCACGACCCATGTAA 44655 Score = 111 bits (122), Expect = 5e-20 Identities = 363/560 (65%), Gaps = 22/560 (4%) Strand=Plus/Plus Query 21644 AGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATT 21703 || |||| |||||||||| | |||||| ||| | || || ||||| | | | | || || Sbjct 17634 AGTAAACTAAATACCTACTATAGGCCAAGCAACTAGGAAAAAATGTAAAGAATGAGAGTT 17693 Query 21704 ATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATT 21763 || || |||||||||| | | || |||||||| || |||||||| | ||||| Sbjct 17694 GTTGAAAT----ATATTGGAAGTTCAATCGGCCAAAATAACCATGAGCAGCTATGATATT 17749 Query 21764 GTAAGTCTCTTCCTCTTGACCAAACT-TGTAACCATAGTTCTGTGAAACCTCTTCAGTCG 21822 ||||| | |||||||| | | | | |||||| | || || | || || | Sbjct 17750 ATAAGTTTTTTCCTCTTTAACTGAATATGTAACTTTCATTAGCGGATTTATTTTATGTGG 17809 Query 21823 TCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAA--ACTCCC 21880 | || || | || || | || | || ||||||||| ||| || | | Sbjct 17810 TTTCCTTTATCAAACTAGAGGTTATCAAGGAACGATGCATAGCACTGAATAAGAAGTTGG 17869 Query 21881 ACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGC 21940 || |||||| | | ||||||| || || ||||| || |||||||||| Sbjct 17870 TGTAATTACGCCTGATA---------TGTGAAATGGGTGTATAAGGATGTTGTGCTCAGT 17920 Query 21941 CTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAA 22000 || ||| || | | | ||||||| | | | | || | |||||| || |||||| Sbjct 17921 CTAGAATACAATCCTAAAGTTGAAAATATCAAAGCTTCCTAGAGGCATACTATAAGAAAA 17980 Query 22001 AGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGA 22060 | | |||| |||| ||||| | | ||| ||| | | | || || ||| |||| || Sbjct 17981 ACATCCCTAGCCAATTGGATAGATCAAGAAAACAATAATAGTAGTTGCAACACGAGCTGA 18040 Query 22061 GTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCC 22120 || |||||||| ||||| || | ||| | |||| | | |||||| |||||| | || Sbjct 18041 ATATGCAACAAAAATCCAAGGACACATACTCAGTCAAAAATTAAGTTGCCACTCACCACC 18100 Query 22121 CATGTAAGCAAAGACGCCAATGAGGAAGTGGAAT---ACGGTGAGTTGGAATGGACCGCC 22177 |||||| ||| | || | || || |||| || | |||| | ||| || | Sbjct 18101 TATGTAAC--AAG-CTACACTAAGTAAAAAGAATTGAACAATTAGTTCTTAAGGATCGTC 18157 Query 22178 GTTGTACAGCCATTCATCAA 22197 ||||| | ||||||||||| Sbjct 18158 ATTGTATAACCATTCATCAA 18177 >seq151 Length=113734 Score = 89.7 bits (98), Expect = 2e-13 Identities = 195/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 21906 ATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAG 21965 |||||||| || || | ||| || ||||||| || || ||| || | ||| ||||||| Sbjct 4638 ATGTGAAATGGGTGTACAAGGATGTTGTGCTTAGTCTAGAATACAATCATAAAGTTGAAA 4697 Query 21966 GTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACA 22025 | || | | || | |||||| || ||||||| |||| |||| ||||| | Sbjct 4698 ATACCAAAACTTCCTAGAGGCATACTATAAGAAAAACTTCCCTAACCAATTGGATAGATC 4757 Query 22026 AGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTC 22085 | ||| ||| | | |||| || ||| |||| || || |||||||| ||||| || | | Sbjct 4758 AAGAAAACAATAATTGCAGTTGCAACACGAGCTGAATATGCAACAAAAATCCAAGGACAC 4817 Query 22086 ATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGG 22145 || | ||| | | |||||| |||||| || |||||| | || | || | Sbjct 4818 ATACTCGGTCAAAAATTAAGTTGCCACTCATCACCTATGTAACAAGCTACACTAAGTAAA 4877 Query 22146 AAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAA 22197 |||| || | |||| | ||| | | ||||| ||||||||||||| Sbjct 4878 AAGTATTGAACAATTAGTTCTTAAGGATAGTCATTGTATAGCCATTCATCAA 4929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146204494571820