Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq1998 190 6e-44
seq287 116 1e-21
seq151 89.7 2e-13
>seq1998
Length=1172
Score = 190 bits (210), Expect = 6e-44
Identities = 300/427 (70%), Gaps = 2/427 (0%)
Strand=Plus/Plus
Query 22028 GAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCAT 22087
||| |||||||| ||||| || |||||||| || || |||||| ||||| || | |||
Sbjct 10 GAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCAT 69
Query 22088 CCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAA 22147
|| || || | |||||||||||||| || ||||||||| | || |||| | |||
Sbjct 70 ACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAA 129
Query 22148 GTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGC 22207
||| | || | || | | |||||||| ||||| | ||||||||||| | || ||
Sbjct 130 GTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACAGATGCCGC 189
Query 22208 TTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGA 22267
|||||| |||||||| || || | || || || | | |||| | ||| || ||
Sbjct 190 TTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGA 249
Query 22268 TATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTC 22327
|| || ||||| ||||| | || || |||| || ||||| || || ||||| || ||
Sbjct 250 AATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATC 309
Query 22328 AACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACG 22386
|| || || || ||| || ||||||||||| || || |||| ||| | | | |
Sbjct 310 TACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTA-G 368
Query 22387 GAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGTAGAGGTGACCCAGG 22446
| ||||| | || || |||||||| | ||||||||||| | ||| ||| | ||||
Sbjct 369 GGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGT 428
Query 22447 AACAAAA 22453
||| ||
Sbjct 429 TACAGAA 435
>seq287
Length=58314
Score = 116 bits (128), Expect = 1e-21
Identities = 159/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 21906 ATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAG 21965
|||||||| || |||||||| || ||||||||||||| ||| || | || |||||||
Sbjct 44434 ATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATTATAAAGTTGAAA 44493
Query 21966 GTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACA 22025
| | | || | |||||| || |||||| |||| |||| ||||| |
Sbjct 44494 ATATTAAAGGTTCCTAGGGGCATGCTATTAGAAAAGCTTCCCTAACCAATTGGATAGATC 44553
Query 22026 AGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTC 22085
| ||| || | | |||| || ||| |||| || || |||||||| ||||| || | |
Sbjct 44554 AAGAAAACCATAATAGCAGTTGCAACATGAGCTGAATATGCAACAAAAATCCAAGGACAC 44613
Query 22086 ATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAA 22127
|| | ||||||| | ||||||||||||| || |||||||||
Sbjct 44614 ATACTTAGTCGAAAATTAAGTTCCCACTCACGACCCATGTAA 44655
Score = 111 bits (122), Expect = 5e-20
Identities = 363/560 (65%), Gaps = 22/560 (4%)
Strand=Plus/Plus
Query 21644 AGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATT 21703
|| |||| |||||||||| | |||||| ||| | || || ||||| | | | | || ||
Sbjct 17634 AGTAAACTAAATACCTACTATAGGCCAAGCAACTAGGAAAAAATGTAAAGAATGAGAGTT 17693
Query 21704 ATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATT 21763
|| || |||||||||| | | || |||||||| || |||||||| | |||||
Sbjct 17694 GTTGAAAT----ATATTGGAAGTTCAATCGGCCAAAATAACCATGAGCAGCTATGATATT 17749
Query 21764 GTAAGTCTCTTCCTCTTGACCAAACT-TGTAACCATAGTTCTGTGAAACCTCTTCAGTCG 21822
||||| | |||||||| | | | | |||||| | || || | || || |
Sbjct 17750 ATAAGTTTTTTCCTCTTTAACTGAATATGTAACTTTCATTAGCGGATTTATTTTATGTGG 17809
Query 21823 TCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAA--ACTCCC 21880
| || || | || || | || | || ||||||||| ||| || | |
Sbjct 17810 TTTCCTTTATCAAACTAGAGGTTATCAAGGAACGATGCATAGCACTGAATAAGAAGTTGG 17869
Query 21881 ACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGC 21940
|| |||||| | | ||||||| || || ||||| || ||||||||||
Sbjct 17870 TGTAATTACGCCTGATA---------TGTGAAATGGGTGTATAAGGATGTTGTGCTCAGT 17920
Query 21941 CTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAA 22000
|| ||| || | | | ||||||| | | | | || | |||||| || ||||||
Sbjct 17921 CTAGAATACAATCCTAAAGTTGAAAATATCAAAGCTTCCTAGAGGCATACTATAAGAAAA 17980
Query 22001 AGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGA 22060
| | |||| |||| ||||| | | ||| ||| | | | || || ||| |||| ||
Sbjct 17981 ACATCCCTAGCCAATTGGATAGATCAAGAAAACAATAATAGTAGTTGCAACACGAGCTGA 18040
Query 22061 GTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCC 22120
|| |||||||| ||||| || | ||| | |||| | | |||||| |||||| | ||
Sbjct 18041 ATATGCAACAAAAATCCAAGGACACATACTCAGTCAAAAATTAAGTTGCCACTCACCACC 18100
Query 22121 CATGTAAGCAAAGACGCCAATGAGGAAGTGGAAT---ACGGTGAGTTGGAATGGACCGCC 22177
|||||| ||| | || | || || |||| || | |||| | ||| || |
Sbjct 18101 TATGTAAC--AAG-CTACACTAAGTAAAAAGAATTGAACAATTAGTTCTTAAGGATCGTC 18157
Query 22178 GTTGTACAGCCATTCATCAA 22197
||||| | |||||||||||
Sbjct 18158 ATTGTATAACCATTCATCAA 18177
>seq151
Length=113734
Score = 89.7 bits (98), Expect = 2e-13
Identities = 195/292 (67%), Gaps = 0/292 (0%)
Strand=Plus/Plus
Query 21906 ATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAG 21965
|||||||| || || | ||| || ||||||| || || ||| || | ||| |||||||
Sbjct 4638 ATGTGAAATGGGTGTACAAGGATGTTGTGCTTAGTCTAGAATACAATCATAAAGTTGAAA 4697
Query 21966 GTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACA 22025
| || | | || | |||||| || ||||||| |||| |||| ||||| |
Sbjct 4698 ATACCAAAACTTCCTAGAGGCATACTATAAGAAAAACTTCCCTAACCAATTGGATAGATC 4757
Query 22026 AGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTC 22085
| ||| ||| | | |||| || ||| |||| || || |||||||| ||||| || | |
Sbjct 4758 AAGAAAACAATAATTGCAGTTGCAACACGAGCTGAATATGCAACAAAAATCCAAGGACAC 4817
Query 22086 ATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGG 22145
|| | ||| | | |||||| |||||| || |||||| | || | || |
Sbjct 4818 ATACTCGGTCAAAAATTAAGTTGCCACTCATCACCTATGTAACAAGCTACACTAAGTAAA 4877
Query 22146 AAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAA 22197
|||| || | |||| | ||| | | ||||| |||||||||||||
Sbjct 4878 AAGTATTGAACAATTAGTTCTTAAGGATAGTCATTGTATAGCCATTCATCAA 4929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146204494571820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |