Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1998 185 1e-41 seq16 104 3e-17 seq287 96.9 4e-15 seq151 96.9 4e-15 seq560 87.8 2e-12 seq14 84.2 3e-11 >seq1998 Length=1172 Score = 185 bits (204), Expect = 1e-41 Identities = 300/429 (70%), Gaps = 2/429 (0%) Strand=Plus/Plus Query 124604 AAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGC 124663 ||||| ||||| ||||| | || || |||||||| |||||| |||||||| ||| Sbjct 8 AAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGC 67 Query 124664 ATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGG 124723 || || | | | | |||||||||| | |||||||| | | ||||| | | Sbjct 68 ATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAG 127 Query 124724 AAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCT 124783 ||||| | || | | || ||||||||| ||||| || |||||||||||||||| ||| Sbjct 128 AAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACAGATGCC 187 Query 124784 GCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCA 124843 |||||||| |||||||| || || | || ||||| || | |||| || |||||| Sbjct 188 GCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCA 247 Query 124844 GAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATA 124903 || || || ||||| ||||| | | ||| || | || ||||| | || || || ||| Sbjct 248 GAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATA 307 Query 124904 TCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGCTGCTGTGAGTAAGCA 124962 || || ||||| || ||||| || || | || || ||| | | ||| || | ||| Sbjct 308 TCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAAGT 366 Query 124963 TGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGTTTGTTGATGTTACCCA 125022 || ||||| | |||||||||||| |||| |||| | ||| | || |||| ||| Sbjct 367 AGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCA 426 Query 125023 CTCACAGAA 125031 | |||||| Sbjct 427 GTTACAGAA 435 >seq16 Length=28979753 Score = 104 bits (114), Expect = 3e-17 Identities = 164/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 139823 AGTCTTCTTAT-CTCTTGTAGAATTATAT-GCTAACAGC-ATTGCCTCTGCTGCTGCAGT 139879 |||||| || | | ||| ||| || ||| || | ||| || ||||| || || ||||| Sbjct 23693276 AGTCTTTTTCTTCCCTTTTAGGATATTATTGCACATAGCCATAGCCTCAGCAGCAGCAGT 23693335 Query 139880 TGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCCTGTAAGTTCTGTGATGAGCGT 139939 |||| || | | || || || | || || ||||| || || || || || | || Sbjct 23693336 CCCTTCGTCGAGCAATGAAGCATTCGACATGGGCAATCCAGTGAGATCCGTAATCATGGT 23693395 Query 139940 TTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATATCTCAGCTTGATAGGGAGTGTA 139999 ||| ||||| | || | ||||| || ||||||||||||||||||||||| || ||||| Sbjct 23693396 TTGATAATTAAGCAAGGACTCCAACCTCCCCTGAGATATCTCAGCTTGATAAGGTGTGTA 23693455 Query 140000 AGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTGTATGACTggggg 140050 |||||||||| |||||||| | | ||||| | || ||||| || Sbjct 23693456 CTGTGTGTACCAAGCTGGATTCTCCATTATGTTTCTCAAAATAACTGGTGG 23693506 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 138158 TACAAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCC 138217 || |||||||| | ||||| |||||||||||||| | ||| ||||| || ||||| Sbjct 23689709 TAAAAATGGTGCCAAGTGTTTCTTCACACCAATAGGACCCATGCCTGGACCACCGCCTCC 23689768 Query 138218 ATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACA 138277 ||||||||| || ||||| ||||| | ||| ||||| || ||||| || ||| || Sbjct 23689769 ATGTGGAATGCAAAATGTTTTATGGAGATTAAGATGGCAAACATCAGCTCCAATAAAACC 23689828 Query 138278 TGGTTTTGCTAGACCTACCTG 138298 ||| ||| ||||| ||||| Sbjct 23689829 TGGACTTGTCAGACCCACCTG 23689849 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 138294 ACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATC 138353 ||||| ||||| | || || ||||| | |||||| ||||||||||||||||||| |||| Sbjct 23690405 ACCTGAGCATTCATGTTAGCCCCATCCATATATACTTGACCACCATTGTCATGAATGATC 23690464 Query 138354 TTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAA 138408 |||||||||| || | |||| | || |||||||| || |||||||||| Sbjct 23690465 TTACATATCTCATCAATACCTTCTTCATAGACTCCATGAGTGGAAGGATATGTAA 23690519 >seq287 Length=58314 Score = 96.9 bits (106), Expect = 4e-15 Identities = 399/619 (64%), Gaps = 28/619 (5%) Strand=Plus/Plus Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| || | ||| |||| | | | || | ||| ||| ||| | | | || ||| Sbjct 17581 TGGTTGAAATCAAAATCATTTAGGCTAAAAGACATAATGCTAATATCTAAAATAGTAAAC 17640 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTG--AAGACTTCTTGAGTTGTTGA 124286 | | || ||| | ||| || | ||||||| || || |||| | |||||||||| Sbjct 17641 TAAATACCTACTATAGGCCAAGCAACTAGGAAAAAATGTAAAGAATGA--GAGTTGTTGA 17698 Query 124287 ATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATG 124346 | | || |||||| | | || ||||| ||||| || || |||| || || || | Sbjct 17699 AATA----TATTGGAAGTTCAATCGGCCAAAATAACCATGAGCAGCTATGATATTATAAG 17754 Query 124347 TTTCTTCTTCTTGTCC-GAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCT 124405 ||| ||| |||| | ||| | |||| | || || | | | ||| ||||| Sbjct 17755 TTTTTTCCTCTTTAACTGAATATGTAACTTTCATTAGCGGATTTATTTTATGTGGTTTCC 17814 Query 124406 CTGATTAGAGAAGATGTAA-CAAGAGAACCATGCATTGCTGAGAATAA--AGATCCTCCG 124462 | || | | ||| || | |||| |||| |||||| || |||||| || | | | Sbjct 17815 TTTATCAAACTAGAGGTTATCAAG-GAACGATGCATAGCACTGAATAAGAAGTTGGT--G 17871 Query 124463 AACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGG 124522 | ||| || |||| ||||| || || || || || ||||| ||||| | | | Sbjct 17872 TA-ATT------ACGCCTGATATGTGAAATGGGTGTATAAGGATGTTGTGCTCAGTCTAG 17924 Query 124523 AAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAA 124582 || || | | ||||||||||| || | || | || || ||||||| || ||| || | Sbjct 17925 AATACAATCCTAAAGTTGAAAATATCAAAGCTTCCTAGAGGCATACTATAAGAAAAACAT 17984 Query 124583 CCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAA 124642 |||| |||| ||| || | ||||| ||| | | || | || | |||||||| Sbjct 17985 CCCTAGCCAATTGGATAGATCAAGAAAACAATAATAGTAGTTGCAACACGAGCTGAATAT 18044 Query 124643 GCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATG 124702 |||||| | |||||||||| ||| | | || | |||| ||||| | || ||| Sbjct 18045 GCAACAAAAATCCAAGGACACATACTCAGTCAAAAATTAAGTTGCCACTCACCACCTATG 18104 Query 124703 T---ATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTA 124759 | | ||| | || | || ||| || | |||| | | |||||| | |||| Sbjct 18105 TAACAAGCTACACTAAGTAAAAAGAATTGAACAATT---AGTTCTTAAGGATCGTCATTG 18161 Query 124760 TACAACCATTCATCAACAG 124778 || ||||||||||||| || Sbjct 18162 TATAACCATTCATCAATAG 18180 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 124484 ATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAA 124543 ||||| || || ||||| || ||||| ||||| || | ||| || | |||||||||||| Sbjct 44434 ATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATTATAAAGTTGAAA 44493 Query 124544 GTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACT 124603 || || | || || ||||| | || ||| || |||| ||||| ||| || | Sbjct 44494 ATATTAAAGGTTCCTAGGGGCATGCTATTAGAAAAGCTTCCCTAACCAATTGGATAGATC 44553 Query 124604 AAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGC 124663 ||||| || | |||| | || | |||||||| |||||| | |||||||||| | Sbjct 44554 AAGAAAACCATAATAGCAGTTGCAACATGAGCTGAATATGCAACAAAAATCCAAGGACAC 44613 Query 124664 ATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTA 124704 || | || || | |||||||||| | |||||||| Sbjct 44614 ATACTTAGTCGAAAATTAAGTTCCCACTCACGACCCATGTA 44654 >seq151 Length=113734 Score = 96.9 bits (106), Expect = 4e-15 Identities = 330/504 (65%), Gaps = 23/504 (5%) Strand=Plus/Plus Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| || || ||| |||| | ||| || | ||| ||| ||| | | | || ||| Sbjct 4332 TGGTTGAAATTAAAATCATTTAGGTTAAAAGACATAATGCTAATATCGAAAATAGTAAAC 4391 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTG--AAGACTTCTTGAGTTGTTGA 124286 | | || ||| | ||| || | ||||||| || || |||| | |||||||||| Sbjct 4392 TAAATACCTACTATAGGCCAAGCAACTAGGAAAAAATGTAAAGAATGA--GAGTTGTTGA 4449 Query 124287 ATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATG 124346 | | ||| |||||| | | || ||||| ||||| || || |||| || || || | Sbjct 4450 AATA--CAT--TGGAAGTTCAATCGGCCAAAATAACCATGAGCAGCTATGATATTATAAG 4505 Query 124347 TTTCTT--CTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTC 124404 ||| || || || | ||| | |||| | || || | | | ||| ||||| Sbjct 4506 TTTTTTTCCTCTTTAACTGAATCTGTAACTTTCATTAGCGGATTTATTTTATGTGGTTTC 4565 Query 124405 TCTGATTAGAGAAGATGTAA-CAAGAGAACCATGCATTGCTGAGAATAA--AGATCCTCC 124461 | || | | ||| || | |||| |||| |||||| || |||||| || | | Sbjct 4566 CTTTATCAAACTAGAGGTTATCAAG-GAACGATGCATAGCATTGAATAAGAAGTTGTT-- 4622 Query 124462 GAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTG 124521 | | ||| | ||| | ||||| || || || | || ||||| |||| | | Sbjct 4623 GTA-ATTACGCCTAAT------ATGTGAAATGGGTGTACAAGGATGTTGTGCTTAGTCTA 4675 Query 124522 GAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGA 124581 ||| || | ||||||||||||| |||| | | || || ||||||| || ||| || Sbjct 4676 GAATACAATCATAAAGTTGAAAATACCAAAACTTCCTAGAGGCATACTATAAGAAAAACT 4735 Query 124582 ACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATA 124641 |||| ||||| ||| || | ||||| ||| | ||||| | || | |||||||| Sbjct 4736 TCCCTAACCAATTGGATAGATCAAGAAAACAATAATTGCAGTTGCAACACGAGCTGAATA 4795 Query 124642 AGCAACACAGATCCAAGGACGCAT 124665 |||||| | |||||||||| ||| Sbjct 4796 TGCAACAAAAATCCAAGGACACAT 4819 >seq560 Length=20368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 124517 GCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAG 124576 || ||||| || | |||||||||||||||||| ||||| || || |||||||||||||| Sbjct 20368 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 20309 Query 124577 AATGAACCCTGACCAAATGGGTATACTAAGAATACAGC 124614 || |||||||||| ||| || | ||||| | ||| Sbjct 20308 AAGCTTCCCTGACCAATTGGATAGATCAAGAAAAGAGC 20271 >seq14 Length=24855542 Score = 84.2 bits (92), Expect = 3e-11 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 122966 AGAATGTTCTTCGTATAGAAAGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGA 123025 ||||| || || | ||||||||||| || || || ||||||||||| | || | ||| Sbjct 951958 AGAATATTTTTAATGTAGAAAGTCTCAAATTCAGGATCTTCTGCTGCACGGATTTTCTGA 952017 Query 123026 GATACAAAGTCGTATGCTCTGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTC 123085 || || ||||| || || | | || || | ||||| || | || | || || Sbjct 952018 GAAACGAAGTCATAGGCACGTAAATTTAGAGTCAGACCGACTAATCCGAGAGCGCTCATC 952077 Query 123086 CACATACCCATGACAGGAACGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAAT 123145 || | |||| | || || || || ||||||| ||| ||||| | ||| | ||||| Sbjct 952078 CATAAACCCGTTACTGGTACAAATAACATAAAGAAATGTAACCAATGTTTATCGGAAAAA 952137 Query 123146 GCGATACCAAATATCTGTGACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTC 123204 || | ||||| || || || | || | ||| || || | ||| |||||||||||| Sbjct 952138 GCAACCCCAAAGATTTGAAACTAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTC 952196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578983787527880