Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1998 232 9e-56 seq14 123 3e-23 seq4 120 4e-22 seq287 113 6e-20 seq560 86.0 8e-12 >seq1998 Length=1172 Score = 232 bits (256), Expect = 9e-56 Identities = 315/437 (72%), Gaps = 2/437 (0%) Strand=Plus/Plus Query 27282 ATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCA 27341 ||||| | ||| || ||| | ||||| || || ||||| |||||||| ||| ||||| Sbjct 1 ATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCA 60 Query 27342 TGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGATGCC 27401 || |||||||| | ||| | |||||||||||||| ||||| ||| | | || Sbjct 61 AGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACC 120 Query 27402 GATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAG 27461 | | |||||| | || | || | ||||||| || || || ||||| ||||| | Sbjct 121 AAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAAC 180 Query 27462 TGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAAC 27521 ||||| |||||||| |||||||| || || | ||| || || ||| | || | || Sbjct 181 AGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAAT 240 Query 27522 TGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACC 27581 ||||||||||| || ||||| ||||| | || || |||| ||| |||||||||||||| Sbjct 241 GGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACC 300 Query 27582 GTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGACAGTTGCTGCTA 27640 |||||||| || || || || || ||||| |||| ||| || |||| |||||| | | Sbjct 301 ATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGA-AGTTGCGGTCA 359 Query 27641 ACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTTGTTAGTTGATG 27700 | | || |||||||||| ||||| ||||| |||| || | |||||| | ||| | Sbjct 360 ATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGG 419 Query 27701 TCACCCACTCACAGAAA 27717 | | ||| | ||||||| Sbjct 420 TTATCCAGTTACAGAAA 436 >seq14 Length=24855542 Score = 123 bits (136), Expect = 3e-23 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 23489 AATATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACT 23548 ||||||||| ||||||| |||||| | | |||||| || ||||| || | ||| Sbjct 951960 AATATTTTTAATGTAGAAAGTCTCAAATTCAGGATCTTCTGCTGCACGGATTTTCTGAGA 952019 Query 23549 CACAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCA 23608 || || ||||| ||||| | ||| |||| || || | | || | || | ||| Sbjct 952020 AACGAAGTCATAGGCACGTAAATTTAGAGTCAGACCGACTAATCCGAGAGCGCTCATCCA 952079 Query 23609 AAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGC 23668 | |||| | || || ||||| ||||||||||| || |||||| | |||| | ||| || Sbjct 952080 TAAACCCGTTACTGGTACAAATAACATAAAGAAATGTAACCAATGTTTATCGGAAAAAGC 952139 Query 23669 AACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTC 23728 |||||| |||||||| || |||| || || || || ||||| ||||| || || || | Sbjct 952140 AACCCCAAAGATTTGAAACTAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGC 952199 Query 23729 CTGAGT 23734 ||||| Sbjct 952200 TTGAGT 952205 >seq4 Length=28735499 Score = 120 bits (132), Expect = 4e-22 Identities = 257/381 (67%), Gaps = 5/381 (1%) Strand=Plus/Minus Query 46980 ATCATCGCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGG 47039 |||| || || |||||||| ||| ||||| | | || ||||||||||||||||| | Sbjct 284362 ATCAAAGCCGGGAGAACATGAGAATTTTCTGGATGGAAGTTATCATTTGGACCATACAAA 284303 Query 47040 TTTGTAGGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATC 47099 || || |||||| ||| || || | | |||||| ||| || |||||||| Sbjct 284302 TTGGTGGGCATCCCAGAAATTGCGTCCCAATTATACTGAATTCTGTAGGCTTGACACATT 284243 Query 47100 TTGATACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTC 47159 || || ||||| ||||| || | |||||| | |||||| | || ||||||||||| | Sbjct 284242 TTTATTCCAGCGATCTTAGCCACAGCATACCATTCATTAGTTGGCTCAAGAGGACCTGTA 284183 Query 47160 ATTAGATATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCA 47219 | | | ||| || || || ||| || || ||||||||||| |||||| Sbjct 284182 AGCAAGGCGTTTTCAGGGATCGGCTGGGGTGCTAACTTGGGGTAAATGCAGGACGAACCA 284123 Query 47220 AGAAATAAAAGTTTCTTAACACCAAACTTACGTGCAGAATGAATGATGTTTGATTGAATC 47279 ||||| | | |||||| || ||| | | || | ||||| || | ||| ||| Sbjct 284122 AGAAAGAGCAATTTCTTGACGCCATGGCGATAAGAGGAGTCAATGACATTGGTTTGGATC 284063 Query 47280 ATCAAATTATCATAG--ATGAAGTGTCCGGGATAATCCTTATTAGCACCAATACCACCCA 47337 | |||| || | || || | | || ||| ||||||||| || ||||||| Sbjct 284062 TGGAGATTA--ATGGCTATAAAATCAGCTGGGTAAGTGTTATTAGCATGGATGCCACCCA 284005 Query 47338 CCTTTGCAGCAG-CAAGATAA 47357 | |||||||||| ||||| || Sbjct 284004 CTTTTGCAGCAGCCAAGACAA 283984 >seq287 Length=58314 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 27169 ATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAA 27228 ||||| || |||||||||||||| ||||| || |||| |||||||| || |||| ||| Sbjct 44434 ATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATTATAAAGTTGAAA 44493 Query 27229 GTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACG 27288 || | || | || || ||||| || || || || | ||| | ||||||| Sbjct 44494 ATATTAAAGGTTCCTAGGGGCATGCTATTAGAAAAGCTTCCCTAACCAATTGGATAGATC 44553 Query 27289 AGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGC 27348 | ||| || | | |||| || || |||| |||||||| ||| | ||||| |||| | Sbjct 44554 AAGAAAACCATAATAGCAGTTGCAACATGAGCTGAATATGCAACAAAAATCCAAGGACAC 44613 Query 27349 ATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAA 27390 |||| || ||| | |||||||||||||| ||||| ||| Sbjct 44614 ATACTTAGTCGAAAATTAAGTTCCCACTCACGACCCATGTAA 44655 >seq560 Length=20368 Score = 86.0 bits (94), Expect = 8e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 27202 GCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAG 27261 ||||||||||||| ||| |||| |||||||||||||| || ||||||||| |||| || Sbjct 20368 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 20309 Query 27262 AAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGA 27318 || || ||||| | ||||||| | ||| | ||| | ||||| || || ||| Sbjct 20308 AAGCTTCCCTGACCAATTGGATAGATCAAGAAAAGAGCAGTAGCAGCTGCAACAGGA 20252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665477604585080