Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 159 4e-34 seq17 93.3 5e-14 >seq2 Length=32417782 Score = 159 bits (176), Expect = 4e-34 Identities = 288/420 (69%), Gaps = 6/420 (1%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| |||| || ||||||||| | || ||||||| || | ||| || || || Sbjct 6732816 GAGGTTGTTGAGTTTCTCAAGAAGCCAGAGAGATTCACTGCAGTTGGGGCTCGCATTCCA 6732757 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | |||||| | ||| ||||| || |||||||| || || ||| ||||| Sbjct 6732756 AAAGGTGTCCTTCTTGTTGGTCCTCCAGGAACCGGAAAGACTCTTCTAGCCAAGGCCATT 6732697 Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410 || |||||| | ||| ||||| || |||| | | ||||| ||||||||| Sbjct 6732696 GCCGGTGAAGCTGGTGTTCCATTTTTCTCCATATCTGGTTCTGAGTTTGTTGAGATGTTT 6732637 Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470 |||||||| |||||| || || || |||||||| ||| ||| |||||| || Sbjct 6732636 GTTGGTGTTGGTGCCTCTAGAGTCCGTGATCTCTTCAAAAAGGCCAAAGAAAATGCTCCT 6732577 Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGT 175527 || ||||| || | ||||| |||||||| || || | |||| | || |||| |||| Sbjct 6732576 TGCATTGTATTTGTAGATGAAATTGATGCTGTTGGAAGGCAAAGAGGCACTGGCATTGGT 6732517 Query 175528 ATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGC 175587 || |||||| || |||||||| || |||| || || | || || |||||||| Sbjct 6732516 ---GGAGGAAATGATGAAAGAGAACAGACCCTTAACCAGCTTTTGACAGAAATGGATGGT 6732460 Query 175588 TTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 ||||| | | ||||| || | || ||||| || |||||| | | || ||||| ||| Sbjct 6732459 TTTGAGGGTAACACTGGTATCATTGTCATTGCAGCAACTAATAGGGCAGACATCCTAGAT 6732400 Score = 109 bits (120), Expect = 7e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 75136 TGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGG 75195 ||| | || ||||||||| ||||||| ||||||| | ||| ||| | | | ||||| Sbjct 14719956 TGACTATGATTACTTTGGCTTCAAAACTCTTGAGAGGTCCTACCTTTTAAAGGTTGATGG 14720015 Query 75196 CATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGA 75255 | | |||||| |||||| ||||||| ||| |||| || |||| || ||| || Sbjct 14720016 GAAAATTGTGGAAAGACCACAGCACATGTTGATGAGGGTTGCTGTCGGTATTCACAAAGA 14720075 Query 75256 AGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGC 75315 |||||||| |||| | | |||||| || |||||| || | |||||| || || Sbjct 14720076 GGACATTGACTCTGCTGTCAAAACATACCACTTGATGTCTCAGCGCTGGTTCATACATGC 14720135 Query 75316 AACACCAACCCTCTTCAATGCTGGTACACC 75345 ||| || || || ||||||||||| || || Sbjct 14720136 AACCCCTACTCTTTTCAATGCTGGAACCCC 14720165 >seq17 Length=27373735 Score = 93.3 bits (102), Expect = 5e-14 Identities = 322/500 (64%), Gaps = 7/500 (1%) Strand=Plus/Minus Query 64713 TTGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCCTGAATGA 64772 ||||||||| || || || ||| | || ||||||| | | ||| | ||||| | | Sbjct 24448493 TTGGACTGCCGAGGAGGTCGATCTCTCTCAAGATCTCCGCCATTGGGAAACCCTAACTTC 24448434 Query 64773 AAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGT 64832 |||| ||| | || || | | | || || |||||||||| || ||||| || || Sbjct 24448433 CGATGAGAAGCACTTTATCACCCATGTTCTTGCCTTCTTTGCTGCCTCTGATGGTATAGT 24448374 Query 64833 TTTTGAGAATATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCATT 64892 | |||| ||| || | | |||| | | ||||| ||| || || || || | || Sbjct 24448373 TCTTGAAAATCTCGCTGGCCGTTTTATGAAGGAAGTTCAGGTAGCTGAGGCTCGTGCTTT 24448314 Query 64893 CTACGCATATCAATGCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATTGATTGA 64952 || | || ||| | || ||| | |||| || | || ||| | || Sbjct 24448313 TTATGGATTCCAAATCGCTATTGAGAATATTCACTCTGAGATGTACAGTCTTTTGTTGGA 24448254 Query 64953 CAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACC 65012 | || || || || ||| ||||| | || ||| | |||||| | || || || Sbjct 24448253 GACTTATATCAAAGACTCCAATGAGAAGAATCGTTTGTTTCATGCCATCGATACCGTTCC 24448194 Query 65013 ATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT--CC 65070 ||| | | || ||||| | ||||| | | ||| |||| || ||| | Sbjct 24448193 TTGTGTGGCTAAAAAGGCTGAGTGGGCTCTCAGGTGGATTGATG----GT-TCGGAGACT 24448139 Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||||| ||| | || | || ||||| ||||||||||| || || ||||| || ||| Sbjct 24448138 TTCGCTGAGAGGCTGATCGCTTTTGCCTGTGTGGAGGGGATATTTTTCTCTGGAAGCTTC 24448079 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||||| || | |||| | ||||||||||| |||||||| || || || ||||| || Sbjct 24448078 TGCGCAATATTTTGGCTAAAGAAGCGGGGACTCATGCCTGGATTAACATTTTCAAACGAG 24448019 Query 65191 CTTATTTCCCGAGATGAGGG 65210 | || || |||||||| || Sbjct 24448018 TTGATCTCTCGAGATGAAGG 24447999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596554544074720