Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq1998 165 1e-35 seq560 86.0 8e-12 >seq1998 Length=1172 Score = 165 bits (182), Expect = 1e-35 Identities = 288/419 (69%), Gaps = 0/419 (0%) Strand=Plus/Plus Query 8446 AAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTC 8505 ||||| || || |||||| | || ||||| |||||| ||| ||||| || | | Sbjct 8 AAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGC 67 Query 8506 ATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGG 8565 ||||| | ||| | | ||||||| | |||||||||| || | |||| | | Sbjct 68 ATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAG 127 Query 8566 AAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCA 8625 ||||| | | || | || ||| ||||| || || || ||||| ||||| | | || Sbjct 128 AAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACAGATGCC 187 Query 8626 GCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCA 8685 |||||||| || || || || || || || ||||| |||| |||| | |||||| Sbjct 188 GCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCA 247 Query 8686 GAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATA 8745 || || || ||||||||||| | | || || | |||||||||||||||||| || ||| Sbjct 248 GAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATA 307 Query 8746 TCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAA 8805 || || || || |||||||| || || | ||||| || || || | || || | Sbjct 308 TCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTA 367 Query 8806 GGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 || ||||| | ||| |||||||| || | ||||| | ||| | || || || | ||| Sbjct 368 GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCA 426 >seq560 Length=20368 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 8359 GCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAG 8418 || |||||||| | ||| ||||| || |||||||| || ||||||||||| |||||||| Sbjct 20368 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 20309 Query 8419 AATGAACCCTGACCAAATGGATATACTAAGAA 8450 || |||||||||| |||||| | ||||| Sbjct 20308 AAGCTTCCCTGACCAATTGGATAGATCAAGAA 20277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615846857172680