Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq1998 232 7e-56 seq14 149 7e-31 seq287 107 2e-18 seq1 87.8 2e-12 seq920 86.0 7e-12 >seq1998 Length=1172 Score = 232 bits (256), Expect = 7e-56 Identities = 309/427 (72%), Gaps = 2/427 (0%) Strand=Plus/Minus Query 165769 TTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTG 165828 ||||| | ||| | |||||||| | |||||||| || | || ||||||||| || Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 165829 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 165887 ||||| || ||| | ||| | |||||| |||| || || |||| ||||| ||||| || Sbjct 375 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCC 317 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947 || || || || || || || |||||||| || |||| ||||| | ||||| ||||| Sbjct 316 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 257 Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCAT 166007 || || |||||||| || |||| |||| || || ||| | || || || || || Sbjct 256 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 197 Query 166008 CTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGT 166067 |||||||| ||||| |||| |||||| | || || || ||||||| | || |||| Sbjct 196 ATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 137 Query 166068 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 166127 | |||||| | |||| | | ||||||||||||||||||||||| || ||| Sbjct 136 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 77 Query 166128 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGC 166187 ||| |||||||| || ||||| |||||| || ||||| || || || ||||| | ||| Sbjct 76 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 17 Query 166188 AGTATTC 166194 || ||| Sbjct 16 TGTTTTC 10 >seq14 Length=24855542 Score = 149 bits (164), Expect = 7e-31 Identities = 185/250 (74%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 167683 ACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTC 167742 ||||| | ||||| |||||||||||||| || || ||||| || | || ||| ||||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 167743 GGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATG 167802 || ||||||| | | |||| ||| | ||||||||||||||||| || || || | | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 167803 GGACTTTGGACATCATCGAT-TGGCATCA-TTGGTCTGGCTCTTAATCTTCGTGCTTACG 167860 || | ||| || | || | | | || | | |||||| |||| ||| | ||||| || | Sbjct 952085 GGTTTATGG--ATGAGCGCTCTCGGATTAGTCGGTCTGACTCTAAATTTACGTGCCTATG 952028 Query 167861 ATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTA 167920 | ||||||||||| | ||| | || || || ||||| || ||||| |||||||| | || Sbjct 952027 ACTTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTA 951968 Query 167921 AAAACATCCT 167930 |||| || || Sbjct 951967 AAAATATTCT 951958 >seq287 Length=58314 Score = 107 bits (118), Expect = 2e-18 Identities = 170/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 166096 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTT 166155 ||||||||||||||||||||||| || || ||| ||||| |||| ||||| | |||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 166156 GCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAA 166215 || || ||||| | || || |||| | | || ||| | | ||||| | ||| | Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 166216 GGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTC 166275 || || || ||| || ||||| || |||| || | ||||||| || | || Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 166276 TTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTA 166335 ||| | ||||||||||| || || ||||| || || || || | ||||| ||| ||| Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGTA 44415 Query 166336 TTTG 166339 | || Sbjct 44414 TATG 44411 Score = 100 bits (110), Expect = 3e-16 Identities = 314/485 (65%), Gaps = 16/485 (3%) Strand=Plus/Minus Query 166096 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTT 166155 ||||| ||| |||||||| |||| || | || ||||| |||| ||||| | |||| Sbjct 18106 TACATAGGTGGTGAGTGGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTTGTT 18047 Query 166156 GCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAA 166215 || || ||||| | || || || | | | || ||| | | ||||| | || | Sbjct 18046 GCATATTCAGCTCGTGTTGCAACTACTATTATTGTTTTCTTGATCTATCCAATTGGCTAG 17987 Query 166216 GGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTC 166275 || |||| ||| || ||||| || |||| || | | ||||||| | | | || Sbjct 17986 GGATGTTTTTCTTATAGTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATTGTA 17927 Query 166276 TTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTA 166335 ||| | |||||||||| || || || || || || || || ||||| | Sbjct 17926 TTCTAGACTGAGCACAACATCCTTATACACCCATTTCACATATCAGGCGT---------A 17876 Query 166336 TTTGGTGGCAGTT--TGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTA 166393 || | || | || ||||||||||| | ||| | || ||| | | | | Sbjct 17875 ATTACACCAACTTCTTATTCAGTGCTATGCATCGTTCCTTGATAACCTCTAGTTTGATAA 17816 Query 166394 GAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAA-GAAGAAGAA 166452 || || || ||| ||||| || | |||||| ||| | || || ||| || Sbjct 17815 AGGAAACCACATAAAATAAATCCGCTAATGAAAGTTACATATTCAGTTAAAGAGGAAAAA 17756 Query 166453 ACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 166512 || || || ||| |||| ||||||||||| || || || |||| ||||||||| | Sbjct 17755 ACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAATA----TAT 17700 Query 166513 TTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 166572 ||||||||||| | || || || || ||||| | ||| |||||| | || || || | | Sbjct 17699 TTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTAG 17640 Query 166573 TTCAC 166577 || || Sbjct 17639 TTTAC 17635 >seq1 Length=34959721 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| || ||||||||||||| ||| Sbjct 4757637 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 4757578 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 4757577 CCTACTTGGGGAG 4757565 >seq920 Length=13384 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| || |||||||| Sbjct 3777 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTA 3836 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 | ||| |||||||| ||||||| Sbjct 3837 GATTCGAATCCTACTTGGGGAG 3858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561233835503600