Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq1998 190 6e-44 seq287 116 1e-21 seq151 89.7 2e-13 >seq1998 Length=1172 Score = 190 bits (210), Expect = 6e-44 Identities = 300/427 (70%), Gaps = 2/427 (0%) Strand=Plus/Minus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 || ||| |||| | ||| ||| | ||||||||||| | |||||||| || || | Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 41294 ATGATTCCGTGCCTCCTTG-CCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACC 41352 ||||| || | | | ||| |||| || || ||||||||||| || ||| || || Sbjct 375 ATGATCCC-TACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCC 317 Query 41353 ACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAA 41412 || || || || ||||| || || ||||| || |||| || || | ||||| ||||| Sbjct 316 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 257 Query 41413 CATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAAT 41472 || || || || ||| | |||| | | || || || | || || |||||||| Sbjct 256 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 197 Query 41473 TTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT 41532 |||||||| || | ||||||||||| | ||||| |||||||| | | || | || Sbjct 196 ATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 137 Query 41533 ATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCG 41592 | |||||| | |||| || | ||||||||| || |||||||||||||| | || Sbjct 136 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 77 Query 41593 ACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGC 41652 || || ||| | || ||||| |||||| || || |||||||| || ||||| ||||| Sbjct 76 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 17 Query 41653 TGTGTTC 41659 ||| ||| Sbjct 16 TGTTTTC 10 >seq287 Length=58314 Score = 116 bits (128), Expect = 1e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||||||||| || ||||||||||||| | ||||||| | ||| | || ||||| ||||| Sbjct 44655 TTACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGT 44596 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || || |||| ||| || |||| | | || ||| | | ||||| |||| | Sbjct 44595 TGCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTA 44536 Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739 ||| |||||| || |||||| | || | | | ||||||| || | || Sbjct 44535 GGGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGT 44476 Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACAT 41781 ||| ||||||||||||| || |||||||| || |||||||| Sbjct 44475 ATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 44434 Score = 111 bits (122), Expect = 5e-20 Identities = 363/560 (65%), Gaps = 22/560 (4%) Strand=Plus/Minus Query 41490 TTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT---ATTCCACTTCCTCA 41546 ||||||||||| | ||||| | || ||| | |||| | || |||| || || | Sbjct 18177 TTGATGAATGGTTATACAATGACGATCCTTAAGAACTAATTGTTCAATTCTTTTTACTTA 18118 Query 41547 TTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGC 41606 || | ||| |||||| || | |||||| |||||| | | |||| | ||| | | Sbjct 18117 GTGTAG-CTT--GTTACATAGGTGGTGAGTGGCAACTTAATTTTTGACTGAGTATGTGTC 18061 Query 41607 CCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTT 41666 | ||||| |||||||| || || |||| ||| || || | | | ||| ||| | | | Sbjct 18060 CTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTACTATTATTGTTTTCTTGATCT 18001 Query 41667 ATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCA 41726 |||| |||| |||| | ||||||| || |||||| | || | | | | |||| Sbjct 18000 ATCCAATTGGCTAGGGATGTTTTTCTTATAGTATGCCTCTAGGAAGCTTTGATATTTTCA 17941 Query 41727 ACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGG 41786 ||| | | | || ||| || |||||||||| || ||||| || || ||||||| Sbjct 17940 ACTTTAGGATTGTATTCTAGACTGAGCACAACATCCTTATACACCCATTTCACA------ 17887 Query 41787 GTGTGGCCGGCGTATTTGGTGGGAGT--TTGTTCTCTGCTATGCACGGTAGCCTGGTCAC 41844 | | |||||| || | | || ||| ||||||||| || | || | || Sbjct 17886 ---TATCAGGCGTAATTACACCAACTTCTTATTCAGTGCTATGCATCGTTCCTTGATAAC 17830 Query 41845 GTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACA-AGTTTG 41903 || | || || || || || | || || | |||||| | | | Sbjct 17829 CTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCGCTAATGAAAGTTACATATTCAG 17770 Query 41904 GTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCT 41963 | |||||||| | ||||| ||||| | |||||||| || |||||||| || | | || Sbjct 17769 TTAAAGAGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACT 17710 Query 41964 TCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTG 42023 |||||||| || || || || | | | | ||||| || || | ||| |||||| Sbjct 17709 TCCAATAT----ATTTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTA 17654 Query 42024 TTGTAGGTATTTGGTTTGCT 42043 | |||||||||| |||| || Sbjct 17653 TAGTAGGTATTTAGTTTACT 17634 >seq151 Length=113734 Score = 89.7 bits (98), Expect = 2e-13 Identities = 195/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 41490 TTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTG 41549 ||||||||||||| ||||| | | ||| | |||| | || |||| | || Sbjct 4929 TTGATGAATGGCTATACAATGACTATCCTTAAGAACTAATTGTTCAATACTTTTTACTTA 4870 Query 41550 GCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCT 41609 | || | |||||| || |||||| |||||| | | ||| | ||| | || | Sbjct 4869 GTGTAGCTTGTTACATAGGTGATGAGTGGCAACTTAATTTTTGACCGAGTATGTGTCCTT 4810 Query 41610 GGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATC 41669 |||| |||||||| || || |||| ||| || |||| | | ||| ||| | | |||| Sbjct 4809 GGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTGCAATTATTGTTTTCTTGATCTATC 4750 Query 41670 CGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACT 41729 | |||| |||| ||||||| || |||||| | || | | || | ||||||| Sbjct 4749 CAATTGGTTAGGGAAGTTTTTCTTATAGTATGCCTCTAGGAAGTTTTGGTATTTTCAACT 4690 Query 41730 ACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACAT 41781 ||| | || ||| || || ||||||| || ||| | || || |||||||| Sbjct 4689 TTATGATTGTATTCTAGACTAAGCACAACATCCTTGTACACCCATTTCACAT 4638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146210894418376