Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq1998 246 9e-61 seq8 87.8 5e-13 >seq1998 Length=1172 Score = 246 bits (272), Expect = 9e-61 Identities = 323/445 (73%), Gaps = 2/445 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || ||| | ||||||||||| |||| |||||| Sbjct 444 TGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 385 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | | | | || || | ||| |||||| |||||||||| Sbjct 384 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCAT 326 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||||||||||||||| |||||||| |||||||||||||| ||||| ||||| || || Sbjct 325 TGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 266 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| || || ||||||||| | | |||| | || || || | ||||| Sbjct 265 TGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTT 206 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| | |||| |||||| | ||||||||||| |||||| | Sbjct 205 TTACCCAATATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGA 146 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 ||| | || | |||||| | | ||| | | |||| |||| || || |||||||| Sbjct 145 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 86 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 85 TAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 26 Query 42699 AGCGACTGCAGTCTTCCTTGTCTAT 42723 || ||||| || ||| | ||||| Sbjct 25 TGCTACTGCTGTTTTCTTGATCTAT 1 >seq8 Length=34000172 Score = 87.8 bits (96), Expect = 5e-13 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || ||||| ||||||||||| |||| |||||| Sbjct 10439089 TGGGGTCGTTTCTGTAACTGGATAACCAGCACTAAAAACCGTCTTTACATTGGATGGTTT 10439030 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGTTTTATTGTCGCTTTCATT 42399 ||||| ||||||| || | | | | || || | |||||| ||||||||||| Sbjct 10439029 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTATATTTATTATCGCTTTCATT 10438970 Query 42400 GCTGCCCCTCCGG 42412 ||||||||||||| Sbjct 10438969 GCTGCCCCTCCGG 10438957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143529358711412