Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq1998 170 6e-38 seq560 80.6 8e-11 >seq1998 Length=1172 Score = 170 bits (188), Expect = 6e-38 Identities = 285/404 (71%), Gaps = 6/404 (1%) Strand=Plus/Plus Query 26459 GGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCAC 26518 || |||| |||||||||| ||||| || | ||| || || | | || ||||||||| Sbjct 35 GGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCAC 94 Query 26519 TGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGT 26578 | | || || ||||| || | ||||||||| | | ||| || | ||| || Sbjct 95 TCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGA 154 Query 26579 CCGCCATTGTATAGCCACTCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAG 26637 ||||||||||||| ||| || || | | |||| |||||||| || ||||||||||| | Sbjct 155 CCGCCATTGTATAACCATTCATCAACAGATGCC-GCTTCCCATATTGGGTAAAAATGCAA 213 Query 26638 TCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAA 26697 || || || ||| | || | | || || || || ||||||||||| || | || Sbjct 214 ACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAG 273 Query 26698 CGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGC 26757 || || ||||| || ||||| || ||||| |||||||| || || || || ||||| || Sbjct 274 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGGGCAGCAATGAAAGC 333 Query 26758 AAGTATAAA-ACATGTAGTGGCTG-CGAGTAAGCAGGGTATCATAAGCACCCCGAACCAT 26815 | ||||| ||| | ||| || | | | ||| |||| ||||| | || || |||||| Sbjct 334 GATAATAAATACA-GAAGTTGCGGTCAATAAAGTAGGG-ATCATCAAAACACCAAACCAT 391 Query 26816 CCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 || | || |||||||| ||||| || || | ||| | ||| || Sbjct 392 CCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 435 >seq560 Length=20368 Score = 80.6 bits (88), Expect = 8e-11 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 26345 GCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTA 26404 || |||||||| | ||||||||| |||||||||||||| || |||||||| |||||| | Sbjct 20368 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 20309 Query 26405 AAACTCCCTTGTCCGAAAGGATAAACTAAGAA 26436 || || || || || | ||||| | ||||| Sbjct 20308 AAGCTTCCCTGACCAATTGGATAGATCAAGAA 20277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147708458512480