Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq1998 210 3e-49 seq287 87.8 2e-12 >seq1998 Length=1172 Score = 210 bits (232), Expect = 3e-49 Identities = 289/404 (72%), Gaps = 0/404 (0%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || ||||| |||||| | ||||||||| | | | | Sbjct 413 CTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCG 354 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| |||| ||||||||||| ||||| ||||| ||||||||||||| Sbjct 353 CAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTC 294 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || |||| ||| || | ||||| ||||| || || |||||||| || | | Sbjct 293 GTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTC 234 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| ||| || || ||| | || || || || || |||||||| ||| || |||||| Sbjct 233 CTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATG 174 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 | ||||| |||||||| ||||||| | || | || | |||||| | | || | Sbjct 173 AATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 114 Query 155291 CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCT 155350 | ||| |||||| ||||||||||| || |||||| || ||||| |||||||| Sbjct 113 CTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTG 54 Query 155351 GTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTC 155394 ||||||||| || || || || | ||||| ||||| ||| Sbjct 53 CTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTC 10 >seq287 Length=58314 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 155361 |||||| ||||||||||| || || || | ||| |||||||||| | ||||||||| Sbjct 44648 GGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTTGCATAT 44589 Query 155362 TCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCT 155421 || || | || | |||| | || ||| | | ||||| | ||| | || Sbjct 44588 TCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAGGGAAGC 44529 Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481 || ||| || ||||| || || | || | || ||| |||| ||| | || ||| | Sbjct 44528 TTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTATTCTAG 44469 Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGT 155534 || || ||||| |||||||||||||| || ||||| | || ||| ||||| Sbjct 44468 GCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGT 44416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584820440221640