Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq1998 206 8e-49 seq287 102 2e-17 seq151 93.3 1e-14 seq560 84.2 6e-12 >seq1998 Length=1172 Score = 206 bits (228), Expect = 8e-49 Identities = 307/430 (71%), Gaps = 4/430 (1%) Strand=Plus/Plus Query 41088 AAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTC 41147 ||||| ||||| ||| |||| | ||||||| ||||| ||| ||||| || | | Sbjct 8 AAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGC 67 Query 41148 ATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAA 41207 ||||| || | | | ||||||||||| | ||| ||| ||||| || | ||| Sbjct 68 ATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAG 127 Query 41208 AAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTG-TGCC 41266 ||||| | ||||| || | ||| || ||||| ||||||| ||| || || | | |||| Sbjct 128 AAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACAGATGCC 187 Query 41267 GGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCC 41326 |||||||| |||||||| ||||| | || || || ||| | |||| | || || Sbjct 188 -GCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACC 246 Query 41327 AGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTAT 41386 ||| ||||||||||| || || | || || || ||||| || ||||| || ||||| || Sbjct 247 AGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAAT 306 Query 41387 ATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATG 41445 |||||| || || || || || || ||||| || || ||| | || || || | ||| | Sbjct 307 ATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAAG 365 Query 41446 CTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCC 41505 || ||||| | ||||||||||| || | ||| || ||||| || ||||| || | || Sbjct 366 TAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCC 425 Query 41506 AGTTACAAAA 41515 ||||||| || Sbjct 426 AGTTACAGAA 435 >seq287 Length=58314 Score = 102 bits (112), Expect = 2e-17 Identities = 202/299 (68%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 40959 ACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATG 41018 ||||| | || || ||||||||||| || |||||||| || || | ||| |||| || Sbjct 44425 ACGCCTAATATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATTATA 44484 Query 41019 AAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAAT 41078 |||||||| | | | |||||| ||||| | || ||| || |||| ||| | | Sbjct 44485 AAGTTGAAAATATTAAAGGTTCCTAGGGGCATGCTATTAGAAAAGCTTCCCTAACCAATT 44544 Query 41079 GGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATC 41138 ||||| | ||||| || | ||| | || | |||||| ||||| ||||| ||| Sbjct 44545 GGATAGATCAAGAAAACCATAATAGCAGTTGCAACATGAGCTGAATATGCAACAAAAATC 44604 Query 41139 CATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACT 41198 || || | ||||| ||||| | ||||||||||| | ||| ||| ||||| Sbjct 44605 CAAGGACACATACTTAGTCGAAAATTAAGTTCCCACTCACGACCCATGTAACAAGCTACA 44664 Query 41199 CCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTC 41257 | | | ||||||| ||||| |||| ||| | | | ||||||| ||| || || Sbjct 44665 CTAAGTTAAAAGTGTTGAACAATTAGTTCATAAGCATTGTCTTTGTATAACCATTCATC 44723 >seq151 Length=113734 Score = 93.3 bits (102), Expect = 1e-14 Identities = 200/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 40959 ACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATG 41018 ||||| | || || |||||||| | || |||||||| | | | ||| |||| ||| Sbjct 4629 ACGCCTAATATGTGAAATGGGTGTACAAGGATGTTGTGCTTAGTCTAGAATACAATCATA 4688 Query 41019 AAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAAT 41078 |||||||| | ||| |||||| |||||||| || ||| ||| |||| ||| | | Sbjct 4689 AAGTTGAAAATACCAAAACTTCCTAGAGGCATACTATAAGAAAAACTTCCCTAACCAATT 4748 Query 41079 GGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATC 41138 ||||| | ||||| ||| | || | || | |||||| ||||| ||||| ||| Sbjct 4749 GGATAGATCAAGAAAACAATAATTGCAGTTGCAACACGAGCTGAATATGCAACAAAAATC 4808 Query 41139 CATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACT 41198 || || | ||||| ||| | ||||| ||||| ||| ||| ||||| Sbjct 4809 CAAGGACACATACTCGGTCAAAAATTAAGTTGCCACTCATCACCTATGTAACAAGCTACA 4868 Query 41199 CCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTC 41257 | | |||||||| ||||| |||| || || | | ||||||||||| || || Sbjct 4869 CTAAGTAAAAAGTATTGAACAATTAGTTCTTAAGGATAGTCATTGTATAGCCATTCATC 4927 >seq560 Length=20368 Score = 84.2 bits (92), Expect = 6e-12 Identities = 86/110 (78%), Gaps = 3/110 (3%) Strand=Plus/Minus Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 || ||||| |||| ||| |||||||| || ||| |||||||| ||||||||||||||| Sbjct 20368 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 20309 Query 41061 AAAGAACCCTGACCGAATGGATAAACTAAGAATACAGC--TAG-AGCTGC 41107 || |||||||| | |||||| | ||||| | ||| ||| |||||| Sbjct 20308 AAGCTTCCCTGACCAATTGGATAGATCAAGAAAAGAGCAGTAGCAGCTGC 20259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143698954645146