Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq1998 197 2e-45 seq287 100 3e-16 seq151 98.7 1e-15 >seq1998 Length=1172 Score = 197 bits (218), Expect = 2e-45 Identities = 303/432 (70%), Gaps = 0/432 (0%) Strand=Plus/Plus Query 67910 ATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCA 67969 ||||| |||||| ||||| || || | || ||||| || ||||| ||| ||||| Sbjct 1 ATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCA 60 Query 67970 AGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGATTCC 68029 ||| |||||||| |||||| || ||||||||||| |||||| ||| | | || Sbjct 61 AGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACC 120 Query 68030 GATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAG 68089 | | |||||| | || | || | |||| || ||||| || ||||| ||||| | Sbjct 121 AAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAAC 180 Query 68090 AGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAAC 68149 || ||| |||||||| || || || || || | ||| || || ||| |||||| || Sbjct 181 AGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAAT 240 Query 68150 AGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACC 68209 ||||||||||| || ||||| || || | || || || | ||||||||| | ||||| Sbjct 241 GGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACC 300 Query 68210 ATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAG 68269 ||| ||||| || ||||| || |||||||| || || || || || | ||| | | Sbjct 301 ATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAA 360 Query 68270 CAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCGATTGTCAACTGAGGT 68329 || ||| |||||||| ||||| ||||| |||| || | || || ||| ||| Sbjct 361 TAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGT 420 Query 68330 GACCCAGTTACA 68341 | ||||||||| Sbjct 421 TATCCAGTTACA 432 >seq287 Length=58314 Score = 100 bits (110), Expect = 3e-16 Identities = 285/430 (66%), Gaps = 26/430 (6%) Strand=Plus/Plus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||||||| || | |||||| |||| || || || || ||||||||||| | Sbjct 17689 GAGTTGTTGAAATAT----ATTGGAAGTTCAATCGGCCAAAATAACCATGAGCAGCTATG 17744 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCC-GAACTTGTAACCGTAGTTCTGTGACTCTTGCTC 67708 || || ||||| | ||| |||| | ||| |||||| | || || | | | Sbjct 17745 ATATTATAAGTTTTTTCCTCTTTAACTGAATATGTAACTTTCATTAGCGGATTTATTTTA 17804 Query 67709 AGTAGTTTCTCTGATAAGAGAAGAAGTAA-CAAGAGAACCGTGCATAGCACTAAAGAGTG 67767 || ||||| | || | | ||| || | |||| |||| ||||||||||| || | Sbjct 17805 TGTGGTTTCCTTTATCAAACTAGAGGTTATCAAG-GAACGATGCATAGCACTGAATAAGA 17863 Query 67768 AACCACCGAA--TACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825 | | | ||| |||| || | || |||||||| |||||||||||||| Sbjct 17864 AGTTGGTGTAATTACGCCTGATA---------TGTGAAATGGGTGTATAAGGATGTTGTG 17914 Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885 ||| | | ||| || | | | |||| ||| || || | | || |||||||| | Sbjct 17915 CTCAGTCTAGAATACAATCCTAAAGTTGAAAATATCAAAGCTTCCTAGAGGCATACTATA 17974 Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAAT----GCTGCAGACA 67941 ||| ||| | || | || | ||||||| |||||| ||| ||| | |||| ||| Sbjct 17975 AGAAAAACATCCCTAGCCAATTGGATAGATCAAGAAAACA-ATAATAGTAGTTGCA-ACA 18032 Query 67942 CTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCC 68001 | |||| || ||||| ||| | |||||||||| ||||| || | || ||||| || Sbjct 18033 C--GAGCTGAATATGCAACAAAAATCCAAGGACACATACTCAGTCAAAAATTAAGTTGCC 18090 Query 68002 ACTGACGACC 68011 ||| || ||| Sbjct 18091 ACTCACCACC 18100 Score = 100 bits (110), Expect = 3e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 67777 ATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGA 67836 ||||||| ||| || | || || |||||||||||||||||||||||||| || | || Sbjct 44414 ATACACCAATTACGCCTAATATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTAGA 44473 Query 67837 ACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAAC 67896 | || | || |||| ||| || | | | || || ||||| | ||| || | Sbjct 44474 ATACAATTATAAAGTTGAAAATATTAAAGGTTCCTAGGGGCATGCTATTAGAAAAGCTTC 44533 Query 67897 CTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATG 67956 | | ||| | ||||||| |||||| || | || | | || |||| || |||| Sbjct 44534 CCTAACCAATTGGATAGATCAAGAAAACCATAATAGCAGTTGCAACATGAGCTGAATATG 44593 Query 67957 CTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC 68011 | ||| | |||||||||| ||||| || || || ||||||||||| |||||| Sbjct 44594 CAACAAAAATCCAAGGACACATACTTAGTCGAAAATTAAGTTCCCACTCACGACC 44648 >seq151 Length=113734 Score = 98.7 bits (108), Expect = 1e-15 Identities = 333/508 (66%), Gaps = 27/508 (5%) Strand=Plus/Plus Query 67482 TGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAAC 67541 |||||||| || ||| | || ||||| || | |||| | | | | | ||| ||| Sbjct 4332 TGGTTGAAATTAAAATCATTTAGGTTAAAAGACATAATGCTAATATCGAAAATAGTAAAC 4391 Query 67542 CAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTG--AAGACTTCTTGAGTTGTTGA 67599 | || | || | ||| | ||| | ||||| || || |||| | |||||||||| Sbjct 4392 TAAATACCTACTATAGGCCAAGCAACTAGGAAAAAATGTAAAGAATGA--GAGTTGTTGA 4449 Query 67600 AAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAG 67659 || | ||| |||||| |||| || || || || ||||||||||| | || || |||| Sbjct 4450 AATA--CAT--TGGAAGTTCAATCGGCCAAAATAACCATGAGCAGCTATGATATTATAAG 4505 Query 67660 TCTCTT--CTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTC 67717 | | || || || | ||| |||||| | || || | | | || ||||| Sbjct 4506 TTTTTTTCCTCTTTAACTGAATCTGTAACTTTCATTAGCGGATTTATTTTATGTGGTTTC 4565 Query 67718 TCTGATAAGAGAAGAAGTAA-CAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCG- 67775 | || | | ||| || | |||| |||| ||||||||| | || | | | Sbjct 4566 CTTTATCAAACTAGAGGTTATCAAG-GAACGATGCATAGCATTGAATAAGAAGTTGTTGT 4624 Query 67776 AATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGG 67835 ||| ||| || | || || |||||||| | |||||||||||||| | | | Sbjct 4625 AAT--------TACGCCTAATATGTGAAATGGGTGTACAAGGATGTTGTGCTTAGTCTAG 4676 Query 67836 AACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAA 67895 || || | ||| |||| ||| ||||| || | || |||||||| | ||| ||| Sbjct 4677 AATACAATCATAAAGTTGAAAATACCAAAACTTCCTAGAGGCATACTATAAGAAAAACTT 4736 Query 67896 CCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGC---TGCAGACACTGGAGCAGAG 67952 || | ||| | ||||||| |||||| ||| | ||| |||| |||| |||| || Sbjct 4737 CCCTAACCAATTGGATAGATCAAGAAAACAATAATTGCAGTTGCA-ACAC--GAGCTGAA 4793 Query 67953 TATGCTACACAGATCCAAGGACGCATAC 67980 ||||| ||| | |||||||||| ||||| Sbjct 4794 TATGCAACAAAAATCCAAGGACACATAC 4821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566932891670040