Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq1998 269 3e-67 seq151 187 3e-42 seq287 179 4e-40 seq14 168 8e-37 seq5 91.5 2e-13 seq1 87.8 2e-12 seq920 82.4 9e-11 >seq1998 Length=1172 Score = 269 bits (298), Expect = 3e-67 Identities = 311/416 (75%), Gaps = 2/416 (0%) Strand=Plus/Plus Query 68391 ATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCA 68450 ||||| || ||| || || | || ||||||||||| || || ||||||||| ||||| Sbjct 1 ATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCA 60 Query 68451 AGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAGATACC 68510 ||| |||||||| ||||| | ||||||||| ||||| |||||||| | | ||| Sbjct 61 AGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACC 120 Query 68511 AATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCATCAAG 68570 || | |||||| | | | || | ||||||| |||||||| ||||| ||||||| Sbjct 121 AAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAAC 180 Query 68571 GGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAAC 68630 | ||| |||||||| || || ||||| || | ||| || || ||| |||||| || Sbjct 181 AGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAAT 240 Query 68631 AGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACC 68690 ||||||||||| || ||||| ||||| || || || |||| |||||||||||||||||| Sbjct 241 GGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACC 300 Query 68691 ATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCTGCAA 68749 ||| || || || || || ||||| ||||| |||| || || ||||| ||||| | | Sbjct 301 ATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGA-AGTTGCGGTCA 359 Query 68750 GCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTG 68805 | ||||||||||||| || || ||||| |||| |||||| ||||| || ||| Sbjct 360 ATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTG 415 >seq151 Length=113734 Score = 187 bits (206), Expect = 3e-42 Identities = 556/850 (65%), Gaps = 36/850 (4%) Strand=Plus/Plus Query 67963 TGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAAC 68022 |||||||| || ||| |||| ||||| || | ||| |||||| | | | ||| ||| Sbjct 4332 TGGTTGAAATTAAAATCATTTAGGTTAAAAGACATAATGCTAATATCGAAAATAGTAAAC 4391 Query 68023 CAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAAC 68082 | ||||| || | |||||| ||| | ||||| || || | ||| | ||||||||||| Sbjct 4392 TAAATACCTACTATAGGCCAAGCAACTAGGAAAAAATGTAAAGAATGAGAGTTGTTGAA- 4450 Query 68083 GATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTC 68142 || ||| |||||| ||| || || || || ||||| ||||| | || || ||||| Sbjct 4451 -ATACAT--TGGAAGTTCAATCGGCCAAAATAACCATGAGCAGCTATGATATTATAAGTT 4507 Query 68143 TCTT--CTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCAC 68200 | || || || || ||| |||||| | || ||| | | ||| |||||||| Sbjct 4508 TTTTTCCTCTTTAACTGAATCTGTAACTTTCATTAGCGGATTTATTTTATGTGGTTTCCT 4567 Query 68201 GAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATA 68260 | || ||| || | || ||||| |||||| ||| |||| | ||| | | Sbjct 4568 TTATCAAACTAGAGGTTATCAAGGAACGATGCATAGCATTGAATA-AGA------AGTTG 4620 Query 68261 CGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACA 68320 | ||||| | || || || ||||| | ||||||||||||| | | ||| | Sbjct 4621 TTGTAATTACGCCTAATATGTGAAATGGGTGTACAAGGATGTTGTGCTTAGTCTAGAATA 4680 Query 68321 CCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTT 68380 | | ||| |||||||| ||||| || | || |||||||| | ||| || || | Sbjct 4681 CAATCATAAAGTTGAAAATACCAAAACTTCCTAGAGGCATACTATAAGAAAAACTTCCCT 4740 Query 68381 GACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAA 68440 ||| | ||||||| || ||| || ||| | ||||||| | || || ||||||| Sbjct 4741 AACCAATTGGATAGATCAAGAAAACAATAATTGCAGTTGCAACACGAGCTGAATATGCAA 4800 Query 68441 CACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATG 68500 || | |||||||||| ||||| | | | | ||||| ||| ||| || ||||| Sbjct 4801 CAAAAATCCAAGGACACATACTCGGTCAAAAATTAAGTTGCCACTCATCACCTATGTAAC 4860 Query 68501 CAAAGATACCAATCAGGAAG---TGAAAGATTACGAGTTGGAAAGGACCACCATTGTACA 68557 | | || || | ||| |||| ||| |||| ||||| ||||||| | Sbjct 4861 AAGCTACACTAAGTAAAAAGTATTGAACAATT---AGTTCTTAAGGATAGTCATTGTATA 4917 Query 68558 ACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGC----- 68612 ||| ||||||| | ||| || | ||||| || ||| || || Sbjct 4918 GCCATTCATCAACAG--------AGCCAGATTGAGTAAAAATGCCAACCTATAGCTGCAG 4969 Query 68613 -ATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAG 68671 | ||| || ||| || | || |||||| || || || |||| || || || | | Sbjct 4970 AAGCAGAAGTAAGAATAATAATACTAGAAATAATATTATTTGCATAAAGTAGAGATCTAA 5029 Query 68672 CAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGA 68731 |||||||||||||||||||| |||| | ||||||||| ||||| || | || | Sbjct 5030 AAACAGGTTCACGAATACCATTAATGTTTATCGGGGGAGCATTAATGAATGCAATAATAA 5089 Query 68732 A-ACAGATGGT-TGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTA 68789 | | ||| | | || | | | ||||||||||||| | || ||||| ||| ||| Sbjct 5090 ATATAGAAGTTGTGTGGTCAATAAAGTAGGGATCATCAAAATACCAAACCATACAATGTA 5149 Query 68790 -AAGGCGGTT 68798 ||||||||| Sbjct 5150 GAAGGCGGTT 5159 >seq287 Length=58314 Score = 179 bits (198), Expect = 4e-40 Identities = 508/776 (65%), Gaps = 42/776 (5%) Strand=Plus/Plus Query 67963 TGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAAC 68022 |||||||| | ||| |||| ||| | || | ||| |||||| | | | ||| ||| Sbjct 17581 TGGTTGAAATCAAAATCATTTAGGCTAAAAGACATAATGCTAATATCTAAAATAGTAAAC 17640 Query 68023 CAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAAC 68082 | ||||| || | |||||| ||| | ||||| || || | ||| | ||||||||||| Sbjct 17641 TAAATACCTACTATAGGCCAAGCAACTAGGAAAAAATGTAAAGAATGAGAGTTGTTGAA- 17699 Query 68083 GATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTC 68142 || ||| |||||| ||| || || || || ||||| ||||| | || || ||||| Sbjct 17700 -AT--ATATTGGAAGTTCAATCGGCCAAAATAACCATGAGCAGCTATGATATTATAAGTT 17756 Query 68143 TCTTCTTC-TTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACG 68201 | ||| || || || ||| |||||| | || ||| | | ||| |||||||| Sbjct 17757 TTTTCCTCTTTAACTGAATATGTAACTTTCATTAGCGGATTTATTTTATGTGGTTTCCTT 17816 Query 68202 AACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACA--GAGATCCACCAAAT 68259 | || ||| || | || ||||| |||||| |||||||| | || | || | Sbjct 17817 TATCAAACTAGAGGTTATCAAGGAACGATGCATAGCACTGAATAAGAAGTTGGTGTAATT 17876 Query 68260 ACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAC 68319 ||||| | || || || ||||| || |||||||||||||| | | ||| Sbjct 17877 ACGCCTG---------ATATGTGAAATGGGTGTATAAGGATGTTGTGCTCAGTCTAGAAT 17927 Query 68320 ACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCT 68379 || | | | |||||||| || || | | || |||||||| | ||| || | || Sbjct 17928 ACAATCCTAAAGTTGAAAATATCAAAGCTTCCTAGAGGCATACTATAAGAAAAACATCCC 17987 Query 68380 TGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCA 68439 | || | ||||||| || ||| || | | ||||||| | || || |||||| Sbjct 17988 TAGCCAATTGGATAGATCAAGAAAACAATAATAGTAGTTGCAACACGAGCTGAATATGCA 18047 Query 68440 ACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTAT 68499 ||| | |||||||||| ||||| || | | | ||||| ||| |||| || ||||| Sbjct 18048 ACAAAAATCCAAGGACACATACTCAGTCAAAAATTAAGTTGCCACTCACCACCTATGTA- 18106 Query 68500 GCAAAGATACCAATCAG------GAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTG 68553 ||| || || | || ||| |||| ||| |||| ||||| | ||||| Sbjct 18107 -ACAAGCTA-CACTAAGTAAAAAGAATTGAACAATT---AGTTCTTAAGGATCGTCATTG 18161 Query 68554 TACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGC- 68612 || ||||| ||||||| | || | || | ||||| || ||| || || Sbjct 18162 TATAACCATTCATCAATAG--------ACCTAGATTGAGTAAAAATGCCAACCTATAGCT 18213 Query 68613 -----ATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAA 68667 | ||| |||||| || | || |||||| || || || |||| || || || Sbjct 18214 GCAGAAGCAGAAGTAGGAATAATAATACTAGAAATAATATTATTTGCATAAAGTAGAGAT 18273 Query 68668 CCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGC 68723 | | |||||||||||||||||||| || | | ||||||||| ||||| || Sbjct 18274 CTAAAAACAGGTTCACGAATACCATTAATATTTATCGGGGGAGCATTAATGAATGC 18329 Score = 136 bits (150), Expect = 5e-27 Identities = 317/475 (67%), Gaps = 20/475 (4%) Strand=Plus/Plus Query 68255 CAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTT 68314 || |||| ||| ||||| | || || || |||||||| |||||||||||||| || | Sbjct 44411 CATATACACCAATTACGCCTAATATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCT 44470 Query 68315 GGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACG 68374 ||| || | || |||||||| || | | | || || ||||| | ||| || Sbjct 44471 AGAATACAATTATAAAGTTGAAAATATTAAAGGTTCCTAGGGGCATGCTATTAGAAAAGC 44530 Query 68375 AACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGT 68434 || | ||| | ||||||| || ||| || || | ||||||| | || || | Sbjct 44531 TTCCCTAACCAATTGGATAGATCAAGAAAACCATAATAGCAGTTGCAACATGAGCTGAAT 44590 Query 68435 ATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCA 68494 |||||||| | |||||||||| ||||| || ||| | ||||||||| ||||| |||| Sbjct 44591 ATGCAACAAAAATCCAAGGACACATACTTAGTCGAAAATTAAGTTCCCACTCACGACCCA 44650 Query 68495 TGTATGCAAAGATACCAATCAG---GAAG---TGAAAGATTACGAGTTGGAAAGGACCAC 68548 |||| ||| || || | || ||| |||| ||| |||| ||| | Sbjct 44651 TGTA--ACAAGCTA-CACTAAGTTAAAAGTGTTGAACAATT---AGTTCATAAGCATTGT 44704 Query 68549 CATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAA 68608 | ||||| ||||| ||||||| | ||||||| | | ||| || ||| | Sbjct 44705 CTTTGTATAACCATTCATCAATAG--------ACCCAAATTGAGTTAAAATGCCAACCTA 44756 Query 68609 TTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAAC 68668 | || ||| |||||| || | || |||||| || || || |||| || || || | Sbjct 44757 TAGCTGCAGAAGTAGGAATAATAATACTAGAAATAATATTATTTGCATAAAGTAGAGATC 44816 Query 68669 CAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGC 68723 | |||||||||| |||||||| || | | |||||||||| |||||| || Sbjct 44817 TAAAAACAGGTTCAAAAATACCATTAATATTTATTGGGGGAGCAGTGATGAAAGC 44871 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 67963 TGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAAC 68022 |||||||| || ||| |||| ||||| || | ||| |||||| | | | ||| ||| Sbjct 44178 TGGTTGAAATTAAAATCATTTAGGTTAAAAGACATAATGCTAATATCTAAAATAGTAAAC 44237 Query 68023 CAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAAC 68082 | ||| | || |||||| ||| | ||||| || || | ||| | ||||||||||| Sbjct 44238 TAAATATCTACCGTAGGCCAAGCAACTAGGAAAAAATGTAAAGAATGAGAGTTGTTGAA- 44296 Query 68083 GATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTC 68142 || ||| || ||| ||| || || || || ||||| ||||| ||||| || ||||| Sbjct 44297 -AT--ATATTGAAAGTTCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTT 44353 Query 68143 TCTTCTT 68149 | || || Sbjct 44354 TTTTTTT 44360 >seq14 Length=24855542 Score = 168 bits (186), Expect = 8e-37 Identities = 190/252 (75%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 66684 AATAGAATGTTCTTTGTGTAGAACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCT 66743 || ||||| || || ||||||| ||||| || || || ||||||||||| | ||| | Sbjct 951955 AAGAGAATATTTTTAATGTAGAAAGTCTCAAATTCAGGATCTTCTGCTGCACGGATTTTC 952014 Query 66744 TGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACC-AATAATACCGATGGAACT 66802 || || || |||||||| ||||| | || |||| ||||| | |||| |||| | || Sbjct 952015 TGAGAAACGAAGTCATAGGCACGTAAATTTAGAGTCAGACCGACTAAT-CCGAGAGCGCT 952073 Query 66803 TGTCCAAAGACCCATAACAGGAACAAACAACATAAAGAAATGCAACCACCTCTTATTGCT 66862 |||| | |||| | || || ||||| |||||||||||||| ||||| |||| | Sbjct 952074 CATCCATAAACCCGTTACTGGTACAAATAACATAAAGAAATGTAACCAATGTTTATCGGA 952133 Query 66863 AAACGCAATACCAAAGATCTGAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTC 66922 ||| |||| |||||||| ||| || | |||||||| || || |||||||| |||||||| Sbjct 952134 AAAAGCAACCCCAAAGATTTGAAACTAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTC 952193 Query 66923 TTCCTCTTGAGT 66934 ||| ||||||| Sbjct 952194 TTCAGCTTGAGT 952205 >seq5 Length=28438989 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/155 (74%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 67949 TATCAAGGAT-AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACA 68007 ||||||| || | | |||||||| | ||| | ||| ||||| |||| | |||||| | Sbjct 7261694 TATCAAGTATTAAATTGGTTGAAATCGAAGCAATTTTGGTTGGGTGCCGTAATGCTAATA 7261753 Query 68008 CCAAGTGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAA 68067 ||||||||||| ||| || |||||||| ||||| |||||||| || ||| Sbjct 7261754 TATGAAGCAGTGAACCAATGACCTACTACAGGCCAGGCAGCTAGGAAGAAATGTGAAGAA 7261813 Query 68068 CGGGAGTTGTTGAACGATGCATACTGGAAGATCAG 68102 | ||||||||||| ||||| ||||||||||| Sbjct 7261814 AGAGAGTTGTTGAAACTGGCATATTGGAAGATCAG 7261848 >seq1 Length=34959721 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| || Sbjct 4757557 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 4757614 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 4757615 TCTACCACTGAGCTACTGAGGA 4757636 >seq920 Length=13384 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||| ||||||||| || ||||||| ||| || Sbjct 3866 AATCAAAT--CTCCCCAAGTAGGATTCGAATCTACGACCAGTCAGTTAACAGCCGACCGC 3809 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 3808 TCTACCACTGAGCTACTGAGGA 3787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572039962777080