Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq10 145 1e-29 seq7 145 1e-29 seq1 109 1e-18 seq13 87.8 3e-12 >seq10 Length=26335333 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || ||||| || || || ||||||| ||| | ||| || |||||||||||| Sbjct 23443230 ATACCTCCCCTCAACCGGAGAACAAGATGCAGTGTCGACTCCTTCTGAATATTATAGTCA 23443289 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || | ||| |||||||| || || | ||||| || |||||| Sbjct 23443290 GCAAGGGTCCGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCAGGA 23443349 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||||||||| || |||| || | ||| |||||| || || |||| Sbjct 23443350 GGGATCCCTTCTTTATCTTGGATCTTGGCCTTGACATTATCAATAGTGTCAGAGCTCTCA 23443409 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || || || || ||||| ||||| || ||||| Sbjct 23443410 ACCTCAAGAGTAATAGTCTTTCCGGTGAGGGTTTTAACAAAGATCTGCAT 23443459 Score = 111 bits (122), Expect = 3e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| |||||||| || || |||||||| | ||||| |||||||| ||||| ||||| || Sbjct 23442392 ATCCTCTAATTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCAGGCGGTATCCCTTCCTT 23442451 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || ||||| | ||| | ||| ||||||||| || ||| ||||||||||| || Sbjct 23442452 GTCCTGGATTTTTGCTTTGACATTATCAATAGTATCCGAGCTCTCGACTTCTAGAGTGAT 23442511 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || | || || ||||| || ||||| Sbjct 23442512 TGTCTTCCCGGTCAAGGTCTTCACAAAAATCTGCAT 23442547 Score = 104 bits (114), Expect = 4e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || ||||| || | ||| | ||| || || ||||| |||| | |||| ||| Sbjct 23447051 AGAACCAGGTGGAGTGTCGACTCCTTCTGGATGTTATAATCGGCAAGGGTTCGGCCATCT 23447110 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | ||||||||||| || || | ||||| |||||||| || || ||||| || ||| Sbjct 23447111 TCAAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCAGGTGGGATGCCTTCCTTGTCT 23447170 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || |||| || | || ||| || |||||| ||| || || ||||| ||||| Sbjct 23447171 TGGATCTTGGCCTTGACGTTATCAATTGTGTCGGAACTCTCCACCTCAAGAGTGATAGTC 23447230 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| ||||| || ||||| Sbjct 23447231 TTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 23447262 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || ||||| || || || ||||||| || | || || |||||||||||| Sbjct 23443002 ATACCTCCCCTCAAACGCAGAACAAGATGCAGAGTGGATTCCTTCTGTATATTATAGTCG 23443061 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||| ||| || | ||| |||||||| || || | ||||| || |||||| Sbjct 23443062 GCAAGGGTTCGGCCATCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCAGGA 23443121 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || |||| ||| | ||| || || |||||| || Sbjct 23443122 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTATCGATGGTGTCGGAACTTTCC 23443181 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||||| || || || || || || || || || || ||||| Sbjct 23443182 ACCTCCAAGGTTATCGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 23443231 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || |||||||| || || |||||||| || | || || || || || || Sbjct 23442774 ATTCCGCCCCTCAATCGGAGAACGAGATGCAAGGTGGATTCCTTCTGTATGTTGTAATCA 23442833 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || ||||||||||| || | | ||| || |||||| Sbjct 23442834 GCGAGGGTCCTCCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCAGGA 23442893 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || |||| ||| | ||| || || ||||| ||| Sbjct 23442894 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCGATTGTGTCGGAGCTTTCA 23442953 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| ||||| || || || || || ||||| || || || ||||| Sbjct 23442954 ACCTCTAGGGTTATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCAT 23443003 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||||||||| || || || ||||| ||||| || ||||||||||| || ||||| || Sbjct 23447573 TGTTTTCCGGCGAAGATCAACCTCTGCTGATCGGGTGGTATTCCTTCCTTGTCTTGGATC 23447632 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | || || ||||| || ||| || || ||||| || || || || Sbjct 23447633 TTGGCCTTAACGTTATCGATGGTATCAGAGCTCTCGACCTCGAGAGTAATGGTCTTTCCG 23447692 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || ||||| Sbjct 23447693 GTGAGGGTTTTCACGAAGATCTGCAT 23447718 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| || || ||||| || | ||||||||||| || || ||||| ||||| Sbjct 23446879 ATCTTCCAATTGCTTCCCTGCAAAGATCAGCCTCTGTTGATCTGGTGGAATTCCCTCTTT 23446938 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || ||||| | || | ||| ||| ||||| || |||||| || | ||| || Sbjct 23446939 GTCCTGGATTTTTGCCTTGACATTATCAATTGTATCAGAGCTCTCAACCTCCAAAGTGAT 23446998 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || | || || ||||| || |||||| Sbjct 23446999 CGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCATT 23447035 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || |||||||| || || || ||||| ||||| || ||||||||||| || ||||| || Sbjct 23447345 TGCTTTCCGGCGAAGATCAACCTCTGCTGATCGGGTGGTATTCCTTCCTTGTCTTGGATC 23447404 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | || || ||||| || ||| || || || || || || || || Sbjct 23447405 TTGGCCTTAACGTTATCGATGGTATCAGAGCTCTCGACCTCGAGTGTAATGGTCTTTCCG 23447464 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || ||||| Sbjct 23447465 GTGAGGGTTTTGACAAAGATCTGCAT 23447490 >seq7 Length=27069033 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || |||||||| || |||||||||| |||| ||||| |||||| ||||| Sbjct 1829300 ATACCTCCCCTCAATCGGAGAACCAGATGCAGAGTAGATTCTTTCTGAATATTGTAGTCA 1829359 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | ||| || || ||| || ||||| ||||||||||| || | ||||| || |||||| Sbjct 1829360 GCTAAGGTCCTTCCATCCTCCAATTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGA 1829419 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || |||| || | || ||| || || || ||| Sbjct 1829420 GGAATCCCTTCCTTATCTTGGATCTTGGCCTTAACGTTGTCAATTGTGTCAGAGCTCTCG 1829479 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || || || || || ||||| || ||||| Sbjct 1829480 ACCTCAAGAGTTATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 1829529 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || |||||||| || || |||||||| || | || || || ||||| || Sbjct 1829072 ATTCCTCCCCTCAATCGGAGAACGAGATGCAAGGTGGATTCCTTCTGTATGTTATAATCT 1829131 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || ||| | | ||| || | || ||||||||||| || || ||||| || |||||| Sbjct 1829132 GCTAGCGTCCGACCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGA 1829191 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || |||| || | || || ||||| || |||| Sbjct 1829192 GGGATGCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTGTCGATGGTATCAGAGCTCTCA 1829251 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| |||||||| ||||| || || || || || || || ||||| Sbjct 1829252 ACCTCTAGGGTTATAGTCTTACCAGTCAGAGTCTTGACGAAGATCTGCAT 1829301 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || |||||||| | || | ||| || || ||||| || | | || || ||| Sbjct 1828862 AGAACCAGATGAAGGGTTGACTCCTTTTGGATGTTATAATCAGCGAGGGTCCTTCCATCC 1828921 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | || || || ||||| || |||| |||||||| || || || ||||| |||||| Sbjct 1828922 TCCAGCTGCTTCCCAGCAAAGATCAATCGTTGTTGATCTGGTGGGATACCTTCCTTATCT 1828981 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || |||| ||| | || || ||||| || || ||||| || ||||| || Sbjct 1828982 TGAATCTTGGCTTTGACGTTATCGATTGTATCCGAGCTTTCGACTTCCAGGGTTATCGTC 1829041 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || ||||||||||| || |||||| Sbjct 1829042 TTTCCGGTGAGGGTTTTTACAAAGATCTGCATT 1829074 >seq1 Length=34959721 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || || ||||| || | |||||||| | || | ||| || ||| || ||||||| Sbjct 31554284 CCGCCCCTCAAGCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGCA 31554343 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | || |||| ||||||||| || || || | | ||| || || || || Sbjct 31554344 AGGGTCCGGCCGTCTTCTAGTTGTTTTCCAGCGAAGATGAGGCGCTGCTGGTCCGGTGGA 31554403 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || || || ||||| || |||| || | ||| ||||| || |||||||| || Sbjct 31554404 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATAGTGTCCGAAGACTCTACC 31554463 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||||||||| || ||||| ||||| ||||| || || || ||||| || Sbjct 31554464 TCTAGAGTTATGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATCTT 31554513 >seq13 Length=28119335 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || ||||| || || | | ||| ||||| ||||| || || || || || || || Sbjct 2662353 TGCTTCCCGGCGAAGATCAGCCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATC 2662294 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| ||||| || ||||||||||| ||||| ||||| || || || Sbjct 2662293 TTGGCCTTGACATTGTCGATAGTGTCCGAAGACTCAACCTCTAGGGTTATCGTCTTCCCC 2662234 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || ||||| Sbjct 2662233 GTTAGGGTTTTCACGAAGATCTGCAT 2662208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899631694972080