Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq17 125 1e-23 seq10 100 4e-16 seq11 98.7 1e-15 seq4 91.5 2e-13 seq16 86.0 9e-12 >seq17 Length=27373735 Score = 125 bits (138), Expect = 1e-23 Identities = 362/555 (65%), Gaps = 5/555 (1%) Strand=Plus/Plus Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 |||| |||||||| ||||| ||| || |||||||||| || || || ||||| | Sbjct 24447969 TATAGCAAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAA 24448028 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || ||||| || ||||| | || | || |||||||||||||| | ||| || | | Sbjct 24448029 AATGTTAATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCA 24448088 Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTA 18328 || || ||||| ||||| || || || || || || | || ||||| ||| | | | Sbjct 24448089 GAGAAAAATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAAGTCT-CCGA 24448147 Query 18329 TTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCT 18388 ||| ||||| | | ||||| || | | | ||| || | | || Sbjct 24448148 ACCATCA--ATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCG 24448205 Query 18389 ATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAA 18448 || |||| ||||||| || || || ||||| ||||| |||||||| || | || | | Sbjct 24448206 ATGGCATGAAACAAACGATTCTTCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGA 24448265 Query 18449 GAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCC 18508 ||||| ||||| || || | || ||||| || || || | |||||| | | |||| Sbjct 24448266 CTGTACATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGCC 24448325 Query 18509 TCGGGATATTGAATCTCGCT-ATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTC 18567 || | |||| || | |||||| | | | | ||| ||| ||||||||| || Sbjct 24448326 TCAGCTACCTGAACTTCCTTCATAAAA-CGGCCAGCGAGATTTTCAAGAACTATACCATC 24448384 Query 18568 AGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATT 18627 || | || || || || | ||||| | || || || || |||| | || | Sbjct 24448385 AGAGGCAGCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGT 24448444 Query 18628 GTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTC 18687 | ||| | | ||||| || ||||| || || || | |||||||| |||| || Sbjct 24448445 TTCCCAATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTC 24448504 Query 18688 GGCCTGTTTGTACAT 18702 ||| | |||||||| Sbjct 24448505 GGCTTTCTTGTACAT 24448519 >seq10 Length=26335333 Score = 100 bits (110), Expect = 4e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || ||||||| | || || || || ||||| | || ||||| Sbjct 23443690 AATATGCAGATTTTCGTTAAAACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGAGC 23443631 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| || ||||| ||| ||| || ||||| || ||||| || || || || Sbjct 23443630 TCCGATACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCGGAT 23443571 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||||||||||| | ||||||||| ||||| |||||| | | ||||| | |||||| Sbjct 23443570 CAGCAAAGATTGATCTTTGCCGGTAAACAGCTTGAAGATGGCCGCACTTTGGCCGATTAT 23443511 Query 156000 AATAT 156004 || || Sbjct 23443510 AACAT 23443506 >seq11 Length=27369018 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | ||||| || || ||||| || ||||| ||| ||| Sbjct 5723224 ATGCAAATCTTTGTGAAAACCCTCACTGGCAAGACAATTACTTTGGAAGTGGAAAGCTCT 5723283 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || || || || ||||| || || || || ||||| || Sbjct 5723284 GATACTATTGATAATGTCAAGGCCAAGATTCAGGATAAGGAGGGGATCCCACCAGACCAG 5723343 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||||||||||||| || ||| | | || | |||| || ||| Sbjct 5723344 CAGAGGTTGATCTTTGCCGGTAAGCAGCTGGAGGATGGCCGTACACTTGCAGACTACAAT 5723403 Query 156003 AT 156004 || Sbjct 5723404 AT 5723405 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || | || || ||||| ||||| | || || ||| |||| Sbjct 5723680 ATGCAGATATTTGTGAAGACCCTAACGGGTAAAACAATTACCCTGGAGGTTGAAAGTTCT 5723739 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || || || ||||| || || ||||| || || || || Sbjct 5723740 GATACTATTGACAATGTCAAGGCAAAGATCCAAGACAAGGAGGGCATCCCACCTGACCAG 5723799 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | ||| ||||||||||| || ||| Sbjct 5723800 CAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAGGAT 5723835 >seq4 Length=28735499 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| |||| || | || || || || || || || || || ||| ||| Sbjct 24493427 ATGCAGATATTTGTTAAGACCCTTACAGGGAAGACAATCACCTTGGAGGTTGAAAGTTCG 24493368 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||||| || || |||||||| || |||||||| || Sbjct 24493367 GACACCATTGACAATGTCAAGGCCAAAATTCAGGACAAAGAAGGGATTCCTCCAGACCAG 24493308 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||||||||| || ||| | | ||| | |||| || || Sbjct 24493307 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTTGCAGACTACAAC 24493248 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| | || ||||| Sbjct 24493247 ATCCAGAAGGAGTCCACCCTTCA 24493225 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| |||| || | || || || || || || || || || ||| ||| Sbjct 24493883 ATGCAGATATTTGTTAAGACCCTTACAGGGAAGACAATCACCTTGGAGGTTGAAAGTTCG 24493824 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || || || |||||||| || |||||||| || Sbjct 24493823 GACACCATTGACAATGTCAAGGCCAAGATTCAGGACAAAGAAGGGATTCCTCCAGACCAG 24493764 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||||||||| || ||| | | ||| | |||| || || Sbjct 24493763 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTTGCAGACTACAAC 24493704 Query 156003 AT 156004 || Sbjct 24493703 AT 24493702 >seq16 Length=28979753 Score = 86.0 bits (94), Expect = 9e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA-AGATTC 155881 ||||| || || | ||||| ||||| || || |||||||| | || || || || | Sbjct 1160421 ATGCAGATCTTCGTGAAAACCTTGACCGGCAAGACTATTACCCTCGAGGTGGAGAGCAGC 1160362 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||||| || ||| || || || || ||||| || |||||||| || Sbjct 1160361 -GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGAATTCCTCCAGACCA 1160303 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| | || | ||||| |||||||||||||| | ||||| | |||||||| Sbjct 1160302 GCAAAGGCTTATCTTCGCCGGAAAGCAGCTCGAAGACGGTCGCACTTTGGCTGATTATAA 1160243 Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025 ||| |||||| | || ||||| Sbjct 1160242 TATTCAAAAAGAGTCTACCCTTCA 1160219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731853529380400