Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq10 104 4e-17 seq4 104 4e-17 seq11 100 5e-16 seq17 98.7 2e-15 seq15 87.8 3e-12 >seq10 Length=26335333 Score = 104 bits (114), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||| | | | || | || || ||||| || ||||||||||| | ||| Sbjct 23442366 ATATTATAATCAGCAAGTGTACGCCCATCCTCTAATTGCTTCCCAGCAAAAATCAGCCTC 23442425 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || ||||| ||||| ||||| || || || ||||| ||| |||||| |||||| Sbjct 23442426 TGCTGATCAGGCGGTATCCCTTCCTTGTCCTGGATTTTTGCTTTGACATTATCAATAGTA 23442485 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || ||||||||||| || || || || || || || || | || |||||| Sbjct 23442486 TCCGAGCTCTCGACTTCTAGAGTGATTGTCTTCCCGGTCAAGGTCTTCACAAAAATCTGC 23442545 Query 172068 AT 172069 || Sbjct 23442546 AT 23442547 Score = 104 bits (114), Expect = 4e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925 ||| | ||||| ||| || || |||||||| | |||| || | || || | || Sbjct 23443484 ATGGAGAGTAGACTCCTTCTGGATGTTATAATCGGCCAAAGTGCGGCCATCTTCAAGCTG 23443543 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 |||||| ||||| || ||||| || || || ||||| || ||||| || ||||| || || Sbjct 23443544 TTTACCGGCAAAGATCAATCTTTGCTGATCCGGTGGAATCCCTTCCTTGTCTTGGATCTT 23443603 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 | ||| || || || ||||| || || || || ||||||||||| || || || Sbjct 23443604 AGCTTTGACGTTGTCGATGGTATCGGAGCTCTCGACCTCGAGAGTAATGGTCTTGCCGGT 23443663 Query 172046 TAATGTTTTAATGAATATCTGCATTTT 172072 | ||||||| ||| |||||||| || Sbjct 23443664 GAGGGTTTTAACGAAAATCTGCATATT 23443690 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | ||||| || || || || || ||||| || || |||||||||||||| | Sbjct 23447562 CGTCTTCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCGGGTGGTATTCCTTCCT 23447621 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || || || || ||| || ||||| || || || || ||||||| Sbjct 23447622 TGTCTTGGATCTTGGCCTTAACGTTATCGATGGTATCAGAGCTCTCGACCTCGAGAGTAA 23447681 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| || || || | ||||| | ||| |||||||| Sbjct 23447682 TGGTCTTTCCGGTGAGGGTTTTCACGAAGATCTGCAT 23447718 >seq4 Length=28735499 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| ||| || | || | || | || | |||||| ||||| || ||| Sbjct 24493882 ATGCCACCTCGAAGGCGGAGCACCAGGTGGAGGGTGGACTCTTTCTGGATATTGTAGTCT 24493941 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | || ||||||||||| || || ||||| ||||||||| Sbjct 24493942 GCAAGTGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGT 24494001 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| || || |||||| ||| ||||| || || ||||| ||| Sbjct 24494002 GGAATTCCCTCTTTGTCCTGGATTTTAGCTTTAACATTGTCAATGGTGTCTGAGCTTTCC 24494061 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || || |||| ||||| | ||| |||||||| Sbjct 24494062 ACCTCCAGGGTGATTGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 24494111 >seq11 Length=27369018 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| || ||||||||||| || || ||||| ||||||||||| || || || || Sbjct 5723834 TCCTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCCTCCTTG 5723775 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || || ||||| |||||||| || ||| || || || ||||| Sbjct 5723774 TCTTGGATCTTTGCCTTGACATTGTCAATAGTATCAGAACTTTCAACCTCCAGGGTAATT 5723715 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| |||| || || | ||||||||||| Sbjct 5723714 GTTTTACCCGTTAGGGTCTTCACAAATATCTGCAT 5723680 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || | || || |||| ||| || ||||| ||||| Sbjct 5724137 ATACCACCACGAAGGCGAAGGACAAGGTGCAAGGTAGACTCCTTCTGGATATTGTAATCA 5724078 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | || || | ||||| |||||||| || |||||||| || || ||| Sbjct 5724077 GCAAGTGTCCTCCCATCCTCGAGCTGTTTTCCAGCAAATATCAATCTCTGCTGATCTGGT 5724018 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || |||||| || ||||| ||||||||||| ||| Sbjct 5724017 GGGATGCCTTCCTTGTCCTGGATTTTAGCCTTCACATTGTCAATAGTATCTGAACTCTCT 5723958 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||||| || || || | || || | || |||||||| Sbjct 5723957 ACCTCCAAGGTAATGGTCTTCCCGGTAAGGGTCTTCACAAAGATCTGCAT 5723908 >seq17 Length=27373735 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 39117 TATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTA 39176 ||||| ||||| || ||||| || || ||||| || | ||| || || || || | Sbjct 24447969 TATAGCAAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAA 24448028 Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTACT 39235 || |||||||| ||||| | ||| | ||| || ||||||||||||| ||| || || | Sbjct 24448029 AATGTTAATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTG-CGCAGAAGCTTCC 24448087 Query 39236 AGAAAAGAATATACCCTCCACACACGCAAATGCTAT 39271 ||| || ||||| ||||||||||| ||||| || || Sbjct 24448088 AGAGAAAAATATCCCCTCCACACAGGCAAAAGCGAT 24448123 >seq15 Length=26192760 Score = 87.8 bits (96), Expect = 3e-12 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||| || || ||||| | || || | ||| | || | ||||| ||||| ||| Sbjct 17285896 ATAATTCCTCCCCTAAGCCTTAGCACGAGATGGATGGTTGATTCTTTCTGGATATTGTAA 17285837 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || | || | ||| | || || | | || ||||| || || |||||||| ||||| Sbjct 17285836 TCAGCCAAGGTTCGGCCATCTTCAAGCTACTTTCCAGCGAAGATCAATCTCTGCTGGTCC 17285777 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| |||||||| || || || || || || ||||| || ||||| | | | Sbjct 17285776 GGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTATC-GCTGCT 17285718 Query 172017 -TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || ||||||||||| || || || | |||| | |||||||||||| || Sbjct 17285717 CTCAACCTCGAGAGTAATGGTCTTTCCGGTCAGGATTTTCACGAATATCTGCATATT 17285661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905113156630200