Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 131 5e-25 seq12 120 9e-22 seq5 118 3e-21 seq2 114 4e-20 seq17 111 5e-19 seq9 93.3 1e-13 >seq1 Length=34959721 Score = 131 bits (144), Expect = 5e-25 Identities = 229/327 (70%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| || ||| || || ||||| ||| | | || | ||| || || ||||| Sbjct 26094852 ATCATATTTAACCATGATATCCTCCATGGCCTTCACAAGCCGCCTCTGGATGTACCCAGT 26094793 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 ||| || || ||||| ||||| || ||||| | | ||||||||||||||| ||||| Sbjct 26094792 CTCAGAAGTCTTCACAGCAGTATCTATAAGACCTTCCCTACCACCCATAGCATGAAAGAA 26094733 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCC--TCG 302730 | ||||| || | ||| | | | | ||| | ||||| ||||| |||| | || Sbjct 26094732 GAACTCTTGAGGGGTCAACCCACGCAGATATGAGTTTTCAAC-AAACC-CGCGACTTTCT 26094675 Query 302731 GGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CATAGCCGTATGGGAT 302789 || || ||| |||||| ||||| |||| |||| | ||| || | || ||||| || Sbjct 26094674 GGTCCATAGTCATCCTTGGTGAAGTGGGGCAATGTCC-GATCTACAAACCCATATGGTAT 26094616 Query 302790 ACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATC 302849 |||||| || ||||| || ||||| |||| || | | ||||||| || || || | Sbjct 26094615 ACGCTTACCCTCAACATTTTGCTGCCCCACACAAGCAGTCATCTGAGATATGTTGATGAA 26094556 Query 302850 ACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||||||||| || || ||| | ||||| Sbjct 26094555 ACTGCCCTTAGATCCTGCAGTAACCAT 26094529 Score = 95.1 bits (104), Expect = 4e-14 Identities = 271/409 (66%), Gaps = 11/409 (3%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| | ||| | |||||||| || ||| || |||||||| ||||| Sbjct 27440448 AAAGCCATCCATTTCTACTAACAACTGATTAAGGGTGCTTTCTCTCTCATCATTGGAACC 27440389 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttt-tACCAACAGCATCAATTTCGTCAATGAAAA 289057 | | ||||| ||| || || | |||| ||||| || || ||||| || | Sbjct 27440388 TGAGAAGCCACCC----CGCCCCCTTGCCCTGCCAATTGCATCTATCTCATCAATAAATA 27440333 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 | | || || | | ||||| || | ||| || | ||| || | |||| ||||| Sbjct 27440332 TAATACTAGGGGCACACTGTCTTGCTTCTTGAAACAAATTTCTCACTCTAGATGGTCCAA 27440273 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCT 289176 ||||||| |||| || | || || ||| | || | | || | ||| | || | | Sbjct 27440272 CACCAACAAACATCTCCATGAAATCTGAACCAGAAA-TGGACAGGAAAGGCACGCCAGAT 27440214 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || ||||| |||| | || ||||| ||||| || || || || || || | || ||| Sbjct 27440213 TCTCCTGCAGTTGCCTTTGCTAGAAGGGTCTTTCCAGTCCCTGGAGGGCCTACCAAAAGA 27440154 Query 289237 ACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAAATT 289294 | || || || | ||| || |||| || | | || |||| ||| |||| | || | Sbjct 27440153 GCACCTTTAGGAATTTTAGCTCCCA--AGTCCTCGTACTTCTTCGGGTTCTTAAGGAAGT 27440096 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 ||||| ||| | ||| | ||||||||||||||| || || ||||| Sbjct 27440095 GTACAAACTCCATGATTTCTTGTTTTGCCTCATCACAACCAGCAACATC 27440047 >seq12 Length=31596830 Score = 120 bits (132), Expect = 9e-22 Identities = 162/225 (72%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 156044 AAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 |||| |||| ||||||||| || || ||||| |||||||| ||||| | |||||| || Sbjct 29957300 AAAAATACCTTTCCTCTTGCCTCCTCCTTGATCAACATACCGGGCAGTATCATTGAACAC 29957359 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 || || ||| |||||||| ||||| || || ||||| ||||| ||||| | ||||| Sbjct 29957360 ACGTAACATGGGAATAATGCCATTAGACGTCCCATTTGTTCCACGAATGTAGCTACCAGT 29957419 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCA 156220 | |||| ||| |||| | | ||||| || || | |||| || ||| || Sbjct 29957420 AGCACGAATATTGTGAACAGAGACACCAATTCCTCCAGCAGATTTGCTGATAACAGCACA 29957479 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| | ||||| | || ||||||||| |||||||| ||| Sbjct 29957480 CTCCTTCAGAGTATCATATATGCCTTCAATACTATCATCTTTCAT 29957524 >seq5 Length=28438989 Score = 118 bits (130), Expect = 3e-21 Identities = 336/509 (66%), Gaps = 18/509 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 ||||||||||| |||| | || || | || | | ||| | ||| || || || Sbjct 18038460 CTATCAAACCTCCCAGGTCTTAACAAAGCAGAATCAAGAACATCAGGTCTATTAGTGGCC 18038519 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTT--AAATCCATCCATACTTGTTAAAATTTGAT 288967 ||||| || | || | || |||| | |||||||||||| || || | |||| Sbjct 18038520 GCCAACACTATAACACC--CGAATTGCCTGAAAATCCATCCATTTCAGTCAACAACTGAT 18038577 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttt 289027 ||| || || || || ||||||||| ||||| | || |||||| | | Sbjct 18038578 TAATAGTCTGCTCTCTCTCATCATTTCCACCTCCAAGACCA--------GCTCCTCTCTG 18038629 Query 289028 --tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 | || || |||||||| || ||||| || | | ||||||| || | || | Sbjct 18038630 CCTTCCCACGGCATCAATCTCATCAATAAATACAATGCACGGAGCCTTCGCCTTGGCTTT 18038689 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||| || ||||| || | ||||| |||| || || ||| || ||||| || || Sbjct 18038690 CTCAAACAAATCTCTCACTCTAGATGCCCCAACTCCCACGAACAACTCAACAAACTCCGA 18038749 Query 289146 AGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || | | || | |||| || ||| || || || ||||| || |||| || | Sbjct 18038750 TGCCGCG-CAGGAGAAAAATGGCACTCCTGCCTCTCCAGCAACTGCTCTAGCCAACAGGG 18038808 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTT-GCCCCAGCA 289263 |||| |||||||||||||| || |||||| ||| |||||||| | |||| || || | Sbjct 18038809 TCTTCCCTGTTCCAGGTGGCCCAACTAATA-AACACCCTTTGGGAATTTTAGCTCCTAAA 18038867 Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 | | || || || ||| |||| || || ||||||| || | |||||| ||||||| Sbjct 18038868 GCTGTGTACTTATCTGGGTTCTTCAAGAAATCTACAACCTCTTGAAGTTCCAATTTTGCT 18038927 Query 289324 TCATCACATCCTGCTACATCAGCAAAAGT 289352 | || |||||| ||||| |||| || Sbjct 18038928 TGGTCTGCTCCTGCCACATCCCCAAATGT 18038956 >seq2 Length=32417782 Score = 114 bits (126), Expect = 4e-20 Identities = 333/508 (66%), Gaps = 16/508 (3%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || |||||||| |||| | || || | |||| || || || || || |||||| Sbjct 6732368 CTGTCAAACCTTCCAGGCCTCAACAAGGCAGAATCTAGGATGTCTGCCCTATTAGTTGCT 6732427 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 || | |||| ||| | | || ||| |||||||| ||| |||| || ||| Sbjct 6732428 GCAATGACAATGATACCAGTGTTACCCTCAAAACCATCCATTTCTGTCAAAAGCTGGTTA 6732487 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC----CGAATCGCTCCtttt 289025 || || ||||| |||||||||||| |||| |||| | | | ||| || Sbjct 6732488 AGGGTCTGTTCTCTTTCATCATTT---CCTC------CACCAATGCCAGTGCCTCTTTGC 6732538 Query 289026 tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 || ||||||||||||||||| || | || | | || |||| ||||| | | || | Sbjct 6732539 CTT-CCAACAGCATCAATTTCATCTACAAATACAATGCAAGGAGCATTTTCTTTGGCCTT 6732597 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 | || | || | || | || || |||| ||||||| |||| || ||||| ||||| Sbjct 6732598 TTTGAAGAGATCACGGACTCTAGAGGCACCAACACCAACAAACATCTCAACAAACTCAGA 6732657 Query 289146 AGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | |||| | || | |||| ||| ||||| || || | ||| | || ||||| | Sbjct 6732658 ACCAGATA-TGGAGAAAAATGGAACACCAGCTTCACCGGCAATGGCCTTGGCTAGAAGAG 6732716 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 |||| || ||||| || || || | | || || || ||||| | |||||| | | Sbjct 6732717 TCTTTCCGGTTCCTGGAGGACCAACAAGAAGGACACCTTTTGGAATGCGAGCCCCAACTG 6732776 Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 | || |||| || |||| | ||| || |||| ||| | || | ||||| | Sbjct 6732777 CAGTGAATCTCTCTGGCTTCTTGAGAAACTCAACAACCTCCATGAAATCCTGCTTTGCTT 6732836 Query 289325 CATCACATCCTGCTACATCAGCAAAAGT 289352 ||||| ||| || |||||| |||| || Sbjct 6732837 CATCAACTCCGGCAACATCATCAAATGT 6732864 >seq17 Length=27373735 Score = 111 bits (122), Expect = 5e-19 Identities = 359/546 (66%), Gaps = 21/546 (4%) Strand=Plus/Minus Query 133081 TATGTTCCCAATTAAGGA-CGACGAGATTTGGCAGATGTATAAAAAACAGCAAGATTTAT 133139 ||||||||||||| | | | || | || ||| ||||||| || ||| | | | | Sbjct 24448553 TATGTTCCCAATTCAATATCCACAA-ATATGGGAGATGTACAAGAAAGCCGAGGCATCCT 24448495 Query 133140 TTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTTACTG 133199 |||||||| | || || ||| | || |||| | ||| |||||| |||| ||| Sbjct 24448494 TTTGGACTGCCGAGGAGGTCGATCTCTCTCAAGATCTCCGCCATTGGGAAACCCTAACTT 24448435 Query 133200 GGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATT 133258 ||||| || || ||||| | ||| | || || || |||||||| ||||||||| Sbjct 24448434 CCGATGAGAAGCACTTTATCACCCATGTTCTT-GCCTTCTTTGCTGCCTCTGATGGTATA 24448376 Query 133259 GTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCC 133318 |||||||||||| | | || |||||| |||||||| | || || || ||||| Sbjct 24448375 GTTCTTGAAAATCTCGCTGGCCGTTTTATGAAGGAAGTTCAGGTAGCTGAGGCTCGTGCT 24448316 Query 133319 TTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATT 133378 |||||||| | || || || || || ||||| || ||| | || | | | | Sbjct 24448315 TTTTATGGATTCCAAATCGCTATTGAGAATATTCACTCTGAGATGTACAGTCTTTTGTTG 24448256 Query 133379 GATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCAT---TAGCGAA 133435 || ||||| |||||||| || ||||| | | || | ||||| || || Sbjct 24448255 GAGACTTATATCAAAGACTCCAATGAGAAGAATCGTTTGTTTCATGCCATCGATACCG-- 24448198 Query 133436 TTTCCTTGTAT---TAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGT 133492 |||||||| | ||||||| |||| |||||| | | ||||| | | | Sbjct 24448197 -TTCCTTGTGTGGCTAAAAAG---GCTGAGTGGGCTCTCAGGTGGATTGATGGTTCG--- 24448145 Query 133493 GCGAGTTTTGCTACTCGTCTCGTTGCTTTTG-CTGTAGTAGAGGGCAtttttttCAGTGG 133551 | || ||| ||| | || | ||||||| |||| || ||||| || |||||| ||| Sbjct 24448144 GAGACTTTCGCTGAGAGGCTGATCGCTTTTGCCTGT-GTGGAGGGGATATTTTTCTCTGG 24448086 Query 133552 TGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTC 133611 |||||| | || |||||||| || ||||| || | | |||||| | ||||| Sbjct 24448085 AAGCTTCTGCGCAATATTTTGGCTAAAGAAGCGGGGACTCATGCCTGGATTAACATTTTC 24448026 Query 133612 TAACGA 133617 ||||| Sbjct 24448025 AAACGA 24448020 >seq9 Length=29413690 Score = 93.3 bits (102), Expect = 1e-13 Identities = 322/493 (65%), Gaps = 7/493 (1%) Strand=Plus/Minus Query 288853 TCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCC 288912 ||||||| ||||| | ||| ||| |||||| ||||| | || |||||| | || Sbjct 20097336 TCAAACCGACCAGGTCTTAATAAAGCTTTGTCTAAGATATCAGGCCTATTTGTTCCAGCA 20097277 Query 288913 AATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAGT 288972 | |||||| | | ||| | |||||||||||| | || | |||||||| Sbjct 20097276 AGTACAACTACTCCTGAGGTGGTCCCAAATCCATCCATTTCTACTAGCAACTGATTAAGA 20097217 Query 288973 GTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttACCA 289032 || ||| | |||||||| ||| | || | || | | ||| || | |||| Sbjct 20097216 GTACTTTCACGCTCATCATTGCCACC-CGAAAAGCCTCC-ACGCCCTC-TTGCTCGACCA 20097160 Query 289033 ACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAAT 289092 | || || ||||| |||||||| | | || || | | ||| || || |||| Sbjct 20097159 ATTGCGTCTATTTCATCAATGAATACAATACTAGGTGCACATTGCCTTGCCTCCTGAAAT 20097100 Query 289093 AATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGAT 289152 || ||| || | |||| |||| |||||| ||||||| | ||| || || | ||| Sbjct 20097099 AAACTTCTGACCCTAGATGGCCCAACTCCAACAAACATTTCCATAAAATCTGACCCAGAT 20097040 Query 289153 ACTTGAATGAATGTT-ACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACC 289211 | | || ||| | ||| | ||| || || |||| | || |||||||| || || Sbjct 20097039 A-TAGATAGAAAGGGCACACCAGATTCACCAGCAGTTGCCTTAGCAAGAAGTGTTTTTCC 20096981 Query 289212 TGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTAT 289270 ||| |||||||| || | | || | || ||||| | ||| || |||| | || || Sbjct 20096980 TGTGCCAGGTGGGCCTACAAGAAGCGCACCTTTTGGAATTTTAGCACCCAACTC-CTCAT 20096922 Query 289271 ATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCAC 289330 |||||| || | || | || | |||| ||| || ||| | ||||||||||||| Sbjct 20096921 ATTTCTTTGGATTTTTCAGGAAGTGAACAAACTCCATAATTTCTTGCTTTGCCTCATCAC 20096862 Query 289331 ATCCTGCTACATC 289343 | || |||||||| Sbjct 20096861 ACCCAGCTACATC 20096849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471779526378403