Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq1998 205 1e-47 seq14 145 8e-30 seq10 105 7e-18 seq287 98.7 1e-15 seq151 93.3 5e-14 seq11 86.0 7e-12 seq7 86.0 7e-12 >seq1998 Length=1172 Score = 205 bits (226), Expect = 1e-47 Identities = 309/437 (71%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 157579 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 157638 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 436 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 377 Query 157639 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157697 |||||| || ||| | ||| | ||||| ||||| || || |||| ||| | ||||| | Sbjct 376 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCC 318 Query 157698 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 157757 | || || || || || || || |||||||| || |||| || || | ||||| |||| Sbjct 317 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 258 Query 157758 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 157817 | || || |||||||| || | || |||| || || ||| | || || || || | Sbjct 257 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAA 198 Query 157818 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 157877 | |||||||| ||||| ||||||| ||| | || || || ||||||| | || | | Sbjct 197 TATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 138 Query 157878 TATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACC 157937 | | |||||| | ||||| | | |||||||| ||||||||||||||| | || Sbjct 137 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 78 Query 157938 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 157997 || | ||||||||||| ||||| ||| |||||||| ||||| || || || || ||| Sbjct 77 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 18 Query 157998 CTGTATTCCTCGTCTAT 158014 |||| ||| | ||||| Sbjct 17 CTGTTTTCTTGATCTAT 1 >seq14 Length=24855542 Score = 145 bits (160), Expect = 8e-30 Identities = 185/252 (73%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 159963 ACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 160022 ||||||| || || ||||| || |||||||| || |||||||| | || || ||||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 160023 GGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATG 160082 || |||| ||||| | || | ||| | |||||||| ||||| ||||| || || | | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 160083 GGTCTTTGGACATCCTCTATTGGCATTATT-GGCCTTGCTCTTAATCTTCGTGCTTACGA 160141 ||| | |||| | || | || |||| | || || |||| ||| | ||||| || || Sbjct 952085 GGTTTATGGATGAGCGCTCTCGG-ATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGA 952027 Query 160142 TTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAA 160201 ||||| ||| | ||| | |||||||||||||| ||||||||||| ||||||| || Sbjct 952026 CTTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAA 951967 Query 160202 AAACATCCTATT 160213 ||| || || || Sbjct 951966 AAATATTCTCTT 951955 >seq10 Length=26335333 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 || ||||| |||||| |||||||| || ||||| | ||||| || | || ||| Sbjct 23499978 TATATTCTTGACGCATTTGAAGAAGCTGGTATTGATCTGCCATACTCATGCAGGGCAGGT 23500037 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 |||||||||| |||||||| ||||||||| |||||| | || ||| |||| | Sbjct 23500038 TCTTGCTCTTCCTGTGCAGGGAAAATTGTAGGAGGAACTCTAGACCAGTCTGATGGGAGC 23500097 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158929 ||| | || ||||| ||||| | ||| || | ||||| || ||||| || || || Sbjct 23500098 TTCCTTGAAGATGACCAGATGGAAGCTGGCTGGGTTCTCACTTGTGTTGCTTACCCTCAG 23500157 Query 158930 TCTGATTGTGT 158940 ||||||||||| Sbjct 23500158 TCTGATTGTGT 23500168 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 ||||| || |||||||||||| | |||||||| || | ||||| || | ||||| Sbjct 7997424 TACATCCTCGACGCAGCAGAAAATGCAGGAGTAGAGCTGCCATACTCATGCAGAGCTGGG 7997365 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 || |||||| | ||||| || | | || ||||| |||| || || ||| ||| Sbjct 7997364 GCCTGCTCTACTTGTGCCGGGCAGCTGGTTACTGGATCTGTGGACCAATCAGATGGGTCA 7997305 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158929 || | |||| || || || | | || | ||| ||||| || || | |||||||| Sbjct 7997304 TTTCTCAACGAGGAGCAAATGGAAAAGGGTTATGTGCTTACCTGCGTCTCTTATCCAACT 7997245 Query 158930 TCTGATTGTGTTGTT 158944 || ||||||||| || Sbjct 7997244 TCAGATTGTGTTATT 7997230 >seq287 Length=58314 Score = 98.7 bits (108), Expect = 1e-15 Identities = 318/492 (65%), Gaps = 30/492 (6%) Strand=Plus/Minus Query 157907 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 157966 ||||| || |||||||| ||||| | | | ||||| | || ||||| | ||| Sbjct 18106 TACATAGGTGGTGAGTGGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTTGTT 18047 Query 157967 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158026 |||||||| |||| || || | | | ||| ||| | ||||||| | || | Sbjct 18046 GCATATTCAGCTCGTGTTGCAACTACTATTATTGTTTTCTTGATCTATCCAATTGGCTAG 17987 Query 158027 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158086 || | ||| || || ||||||||| || | || || || ||| |||| | | ||||| Sbjct 17986 GGATGTTTTTCTTATAGTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATTGTA 17927 Query 158087 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTA 158146 ||| | | || |||||||||||||| ||||| || || || || || | Sbjct 17926 TTCTAGACTGAGCACAACATCCTTATACACCCATTTCACATATCAGGCGTA--------A 17875 Query 158147 TTCGGTGGATCTCTT-TTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCAC---TCGT 158202 || | |||| ||| ||||||||| ||||| ||| | || | || Sbjct 17874 TTACACCAACTTCTTATTCAGTGCTATGCA--------TCGTTCCTTGATAACCTCTAGT 17823 Query 158203 TCGT-----GAAACGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAA-GA 158256 | | ||||| || ||| | || || | |||||| ||| || || || Sbjct 17822 TTGATAAAGGAAACCACATAAAATAAATCCGCTAATGAAAGTTACATATTCAGTTAAAGA 17763 Query 158257 GGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATA 158316 |||| | || ||||| ||| | || || ||||| || || || || |||| ||||||||| Sbjct 17762 GGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAATA 17703 Query 158317 CGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGG 158376 | ||||||||||| | ||| || || || ||||| | ||| |||||| | || || Sbjct 17702 ----TATTTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGG 17647 Query 158377 CATCTGGTTCAC 158388 || | ||| || Sbjct 17646 TATTTAGTTTAC 17635 Score = 96.9 bits (106), Expect = 4e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 157907 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 157966 |||||||| ||||||||||||||| | || || ||||| | || ||||| | ||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 157967 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158026 |||||||| |||| || || | || | || ||| | ||||||| | ||| | Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 158027 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158086 || || || || ||||| || || | || | || ||| |||| || ||||| Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 158087 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATAT 158127 ||| | || || |||||||||||||||||||| || || || Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 44434 >seq151 Length=113734 Score = 93.3 bits (102), Expect = 5e-14 Identities = 296/456 (65%), Gaps = 31/456 (7%) Strand=Plus/Minus Query 157944 GTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTAT 158003 ||||| | || ||||| | ||| |||||||| |||| || || | ||| | ||| | Sbjct 4821 GTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTGCAATTATTGTTT 4762 Query 158004 TCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTG 158063 || | ||||||| | ||| | || ||| || || ||||||||| || | | || Sbjct 4761 TCTTGATCTATCCAATTGGTTAGGGAAGTTTTTCTTATAGTATGCCTCTAGGAAGTTTTG 4702 Query 158064 GTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCC 158123 ||| ||| |||| ||| |||||||| | | | |||||||||||| | ||||| || | Sbjct 4701 GTATTTTCAACTTTATGATTGTATTCTAGACTAAGCACAACATCCTTGTACACCCATTTC 4642 Query 158124 ATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTT-TTCTCTGCTATGCACGGAAGT 158182 | || | || || ||| | |||| ||| ||||||||| Sbjct 4641 ACATATTAGGCGT--------AATTACAACAACTTCTTATTCAATGCTATGCA------- 4597 Query 158183 CTCGTTACTTCCT---CACTCGTTCG-----TGAAACGACTGAAACAGAGTCACAGAACT 158234 ||||| ||| | | || ||| | ||||| || ||| | || || Sbjct 4596 -TCGTTCCTTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCGCTAATG 4538 Query 158235 ACGGTTACAAGTTC-GGTCAAGAGG-AAGAGACCTATAACATCGTCGCAGCACATGGCTA 158292 | |||||| ||| | | |||||| || | || ||||| ||| | || || ||||| || Sbjct 4537 AAAGTTACAGATTCAGTTAAAGAGGAAAAAAACTTATAATATCATAGCTGCTCATGGTTA 4478 Query 158293 CTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTT 158352 || || || |||| |||||||| | ||||||||||| | ||| || || || || Sbjct 4477 TTTTGGCCGATTGAACTTCCAAT----GTATTTCAACAACTCTCATTCTTTACATTTTTT 4422 Query 158353 CCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCAC 158388 ||| | ||| |||||| | || || || | ||| || Sbjct 4421 CCTAGTTGCTTGGCCTATAGTAGGTATTTAGTTTAC 4386 >seq11 Length=27369018 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 ||||| ||||| || || || | ||||||||||| | |||||||| | ||||| Sbjct 27029556 TACATCCTAGATGCGGCTGAGAATGCAGGAGTTGAGCTACCCTACTCTTGCAGGGCTGGA 27029615 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 ||||||||| | ||||| || || || || || || | |||||||| |||| || Sbjct 27029616 GCTTGCTCTACTTGTGCTGGGAAGATGGTGTCAGGCTCAGTTGATCAATCTGATGGTTCC 27029675 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158929 ||| | || || |||| || | | || | | | || || ||||| | || ||||| Sbjct 27029676 TTCCTGGATGAGAATCAAATGGAGGGGGGTTATCTGCTGACTTGTGTTTCTTACCCAACT 27029735 Query 158930 TCTGATTGTGTTGTT 158944 || ||||||||| || Sbjct 27029736 TCAGATTGTGTTATT 27029750 >seq7 Length=27069033 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 158804 GCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGAT 158863 ||||||| ||||||| | |||| | ||| ||||| |||||||| |||||| ||| Sbjct 1886556 GCTGGTGATTGCTCTGCTTGTGTTGCGAAACTTGTAGAAGGAACTGTGGATCAGTCTGAG 1886615 Query 158864 CAGTCGTTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATAT 158923 || ||| | ||||| |||||||||||||| || | ||||| || ||||| || ||| Sbjct 1886616 GGGTGCTTCCTTGACGAGGATCAGATTGCAGCTGGTTGGGTTCTCACTTGTGTTGCTTAT 1886675 Query 158924 CC 158925 || Sbjct 1886676 CC 1886677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548360560401080