Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq1998 260 2e-64 seq14 159 4e-34 seq287 125 8e-24 seq151 120 3e-22 >seq1998 Length=1172 Score = 260 bits (288), Expect = 2e-64 Identities = 321/436 (74%), Gaps = 2/436 (0%) Strand=Plus/Minus Query 150839 TTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCTG 150898 || ||| ||||| | ||| ||| | |||||||| || | || ||||| ||||| || Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 150899 ATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCCC 150958 ||||| || ||| | ||| | ||||| | || || | || ||||| ||||| || Sbjct 375 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCT 316 Query 150959 CCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAAC 151018 || || || || ||||| || |||||||| ||| |||| ||||| | || || ||||| Sbjct 315 CCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 256 Query 151019 ATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCATC 151078 || || |||||||| || ||||| ||||| ||||| ||| |||| || || || || Sbjct 255 ATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATA 196 Query 151079 TGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTC 151138 |||||||| || ||| | ||||||||| | ||||| || ||||||| | || |||| Sbjct 195 TGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 136 Query 151139 TTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTACCGC 151198 | |||||| | ||||| | | |||||||||||||||||||||||| || ||| Sbjct 135 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 76 Query 151199 TTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGC 151257 |||||||||| || ||||| ||| |||||||| || ||||| ||||| ||||| | ||| Sbjct 75 CTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 17 Query 151258 AGTGTTCCTCGTCTAT 151273 || ||| | ||||| Sbjct 16 TGTTTTCTTGATCTAT 1 >seq14 Length=24855542 Score = 159 bits (176), Expect = 4e-34 Identities = 186/251 (74%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 153028 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 153087 ||||||| ||||| || ||||| ||||| || |||||||| || | || || || ||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 153088 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 153147 || |||||||| | |||||| ||| | |||||||||||| | |||||||| || | | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 153148 GGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGAT 153207 ||| | |||| || | ||| | | ||||| |||| ||| | ||||| || || Sbjct 952085 GGTTTATGGATGAGCGCTCTCGGATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGAC 952026 Query 153208 TTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAG 153267 || || ||||| ||||| | || |||||||||||||||||||||| ||||| | || Sbjct 952025 TTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAA 951966 Query 153268 AATATCCTTTT 153278 ||||| || || Sbjct 951965 AATATTCTCTT 951955 >seq287 Length=58314 Score = 125 bits (138), Expect = 8e-24 Identities = 310/467 (66%), Gaps = 14/467 (3%) Strand=Plus/Minus Query 150941 GCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCT 151000 || |||||| |||||||||| | | || |||| || |||||| ||| | | ||| Sbjct 44871 GCTTTCATCACTGCTCCCCCAATAAATATTAATGGTATTTTTGAACCTGTTTTTAGATCT 44812 Query 151001 CTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGT 151060 || | || | || || || || ||| || | || ||||| ||||| ||||| ||| Sbjct 44811 CTACTTTATGCAAATAATATTATTTCTAGTATTATTATTCCTACTTCTGCAGCTATAGGT 44752 Query 151061 CTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGT 151120 ||| || | | || |||| ||| | ||||||||| | ||||| | | Sbjct 44751 TGGCATTTTAACTCAATTTGGG--------TCTATTGATGAATGGTTATACAAAGACAAT 44700 Query 151121 CCTTTCCAACTCGTTGTCTTCCACTTC---CTGATTGGTATCTATGCTTACATGGGTCGT 151177 ||| |||| |||| ||||| || | || || || || ||||||||||||| Sbjct 44699 GCTTATGAACTAATTGTTCAACACTTTTAACTTAGTG-TAGCT-TG-TTACATGGGTCGT 44643 Query 151178 GAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCTGCT 151237 ||||||||||| || || | ||||| |||| ||||| | |||||||| || ||| Sbjct 44642 GAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTTGCATATTCAGCT 44583 Query 151238 CCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 151297 | ||||| |||| | | || ||| | ||||||| | ||| | || || ||| Sbjct 44582 CATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAGGGAAGCTTTTCT 44523 Query 151298 GATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAG 151357 || |||||||| || | | | | ||||||| || |||| ||| | || ||| Sbjct 44522 AATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTATTCTAGGCTGAG 44463 Query 151358 CACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGT 151404 |||||||| || |||||||| || || || | || || |||||| Sbjct 44462 CACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGT 44416 Score = 113 bits (124), Expect = 5e-20 Identities = 491/771 (64%), Gaps = 32/771 (4%) Strand=Plus/Minus Query 150941 GCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCT 151000 |||||||| ||||||||| | | || |||| || |||||||| ||| | | ||| Sbjct 18329 GCATTCATTAATGCTCCCCCGATAAATATTAATGGTATTCGTGAACCTGTTTTTAGATCT 18270 Query 151001 CTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAAC------GCT 151054 || | || | || || || || ||| || | || ||||| ||||| ||| Sbjct 18269 CTACTTTATGCAAATAATATTATTTCTAGTATTATTATTCCTACTTCTGCTTCTGCAGCT 18210 Query 151055 ATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAAC 151114 || ||| ||| || || | |||| || ||| | ||||||||| | ||||| Sbjct 18209 ATAGGTTGGCATTTTTACTCAATCTAGG--------TCTATTGATGAATGGTTATACAAT 18158 Query 151115 GGTGGTCCTTTCCAACTCGTTGTC---TTCCACTTCCTGATTGGTATCTATGCTTACATG 151171 | | ||||| |||| |||| ||| || || | || || || || |||||| Sbjct 18157 GACGATCCTTAAGAACTAATTGTTCAATTCTTTTTACTTAGTG-TAGCT-TG-TTACATA 18101 Query 151172 GGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCGTTGCATAC 151231 ||| |||||||| |||| || | || ||||| |||| ||||| | |||||||| Sbjct 18100 GGTGGTGAGTGGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTTGTTGCATAT 18041 Query 151232 TCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCT 151291 || |||| ||||| || | | | || ||| | ||||||| | || | || | | Sbjct 18040 TCAGCTCGTGTTGCAACTACTATTATTGTTTTCTTGATCTATCCAATTGGCTAGGGATGT 17981 Query 151292 TTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAA 151351 || ||| || ||||| || || | | || | ||||||| | | |||| ||| | Sbjct 17980 TTTTCTTATAGTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATTGTATTCTAG 17921 Query 151352 GCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGT 151411 | ||||||||||| || || ||||| || || || | ||| || | | Sbjct 17920 ACTGAGCACAACATCCTTATACACCCATTTCACAT-----ATCAGGC--GTAATTACACC 17868 Query 151412 GGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACC 151471 | | ||| || ||||| |||| || | || ||| || | || ||| Sbjct 17867 AACTTCTTATTCAGTGCTATGCATCGTTCCTTGATAACCTCTAGTTTGATAAAGGAAACC 17808 Query 151472 ACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTC-GGTCAAGAAGAAGAGACCTACAA 151530 || |||| | ||| || | |||||| ||| | | |||| ||| | || || || Sbjct 17807 ACATAAAATAAATCCGCTAATGAAAGTTACATATTCAGTTAAAGAGGAAAAAACTTATAA 17748 Query 151531 CATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAA 151590 ||| | || || || ||||| ||||| || | | ||||||||| | |||||||| Sbjct 17747 TATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAATA----TATTTCAACAA 17692 Query 151591 TTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGC 151650 || | ||| | || || ||||| | || |||||| | || ||||| | ||| ||| Sbjct 17691 CTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTAGTTTACTAT 17632 Query 151651 ACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCA 151701 | | | | |||| ||| | || | ||| || | ||| | |||||||| Sbjct 17631 TTTAGATATTAGCATTATGTCTTTTAGCCTAAATGATTTTGATTTCAACCA 17581 >seq151 Length=113734 Score = 120 bits (132), Expect = 3e-22 Identities = 489/771 (63%), Gaps = 31/771 (4%) Strand=Plus/Minus Query 150941 GCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCT 151000 |||||||| ||||||||| | |||| |||| || |||||||| ||| | | ||| Sbjct 5081 GCATTCATTAATGCTCCCCCGATAAACATTAATGGTATTCGTGAACCTGTTTTTAGATCT 5022 Query 151001 CTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTC------CTTCTTCTAACGCT 151054 || | || | || || || || ||| || | || ||| || ||||| ||| Sbjct 5021 CTACTTTATGCAAATAATATTATTTCTAGTATTATTATTCTTACTTCTGCTTCTGCAGCT 4962 Query 151055 ATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAAC 151114 || ||| ||| || || | |||||| |||| | ||||||||||| ||||| Sbjct 4961 ATAGGTTGGCATTTTTACTCAATCTGG--------CTCTGTTGATGAATGGCTATACAAT 4910 Query 151115 GGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGT 151174 | ||||| |||| |||| |||| | || || | | |||||| ||| Sbjct 4909 GACTATCCTTAAGAACTAATTGTTCAATACTTTTTACTTAGTGTAGCTTGTTACATAGGT 4850 Query 151175 CGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCT 151234 ||||||| |||| || | | ||||| |||| ||||| | |||||||| || Sbjct 4849 GATGAGTGGCAACTTAATTTTTGACCGAGTATGTGTCCTTGGATTTTTGTTGCATATTCA 4790 Query 151235 GCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTC 151294 |||| ||||| |||| | | || ||| | ||||||| | ||| | || ||| Sbjct 4789 GCTCGTGTTGCAACTGCAATTATTGTTTTCTTGATCTATCCAATTGGTTAGGGAAGTTTT 4730 Query 151295 TCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCA 151354 ||| || ||||| || || | || ||| | ||||||| ||| |||| ||| | | Sbjct 4729 TCTTATAGTATGCCTCTAGGAAGTTTTGGTATTTTCAACTTTATGATTGTATTCTAGACT 4670 Query 151355 GAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCT--GGTGTCTTCGGTG 151412 |||||||||| || | ||||| || || || | || || | |||| Sbjct 4669 AAGCACAACATCCTTGTACACCCATTTCACATATTAGGCGTAATTACAACAACTTC---- 4614 Query 151413 GATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCA 151472 | ||| || ||||| |||| || | || ||| || | || |||| Sbjct 4613 -----TTATTCAATGCTATGCATCGTTCCTTGATAACCTCTAGTTTGATAAAGGAAACCA 4559 Query 151473 CCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAG--AAGAGACCTACAA 151530 | |||| | ||| || | |||||| ||| || || || || | || || || Sbjct 4558 CATAAAATAAATCCGCTAATGAAAGTTACAGATTCAGTTAAAGAGGAAAAAAACTTATAA 4499 Query 151531 CATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAA 151590 ||| | || || || ||||| ||||| || | | |||||||| | |||||||| Sbjct 4498 TATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAAT----GTATTTCAACAA 4443 Query 151591 TTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGC 151650 || | ||| | || || ||||| | || |||||| | || ||||| | ||| ||| Sbjct 4442 CTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTAGTTTACTAT 4383 Query 151651 ACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCA 151701 | | | | |||| ||| | || ||||| || | ||| || |||||||| Sbjct 4382 TTTCGATATTAGCATTATGTCTTTTAACCTAAATGATTTTAATTTCAACCA 4332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549608528904680