Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq1998 179 4e-40 seq14 93.3 5e-14 >seq1998 Length=1172 Score = 179 bits (198), Expect = 4e-40 Identities = 288/413 (70%), Gaps = 3/413 (1%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| |||||| || || | ||| |||| ||||||||||| || Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 |||||||| | | | || || || || || ||| | || ||||| ||||| ||| Sbjct 375 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCT 316 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414 || || ||||| || || || | ||||| ||| | || ||| | | ||||| ||||| Sbjct 315 CCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 256 Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474 || || |||||||| | |||| |||| || ||||| || || || || || || Sbjct 255 ATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATA 196 Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534 |||||||| || || | || || ||||| || || || |||||||| || || || || Sbjct 195 TGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 136 Query 72535 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 72594 | |||||| | |||| | || ||||||||| | |||||||||| | | | Sbjct 135 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 76 Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGC 72647 || || ||| | |||||||| ||| ||||| ||||| ||||| |||||| Sbjct 75 CTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGT---TGCAGC 26 >seq14 Length=24855542 Score = 93.3 bits (102), Expect = 5e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 74063 GAAGAGACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCA 74122 ||||| |||||| ||| | || |||||| | || | || || || ||||| | || Sbjct 952196 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTTGGGGTTGCT 952137 Query 74123 TTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGG 74182 ||||| | ||| | ||||| ||| ||||||| || ||||| || | |||| | ||| Sbjct 952136 TTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACGGGTTTATGG 952077 Query 74183 ACATCATCTATAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCT 74242 | || | || | || ||||| | || || | | || || ||||| || ||| Sbjct 952076 ATGAGCGCTCTCGGATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGACTTCGTTTCT 952017 Query 74243 CAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCT 74301 || | || | ||||||||||| || || ||||| || ||||||| ||| || ||||| Sbjct 952016 CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAAAATATTCT 951958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572859142102520