Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq17 116 5e-20 >seq17 Length=27373735 Score = 116 bits (128), Expect = 5e-20 Identities = 191/273 (70%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| || ||||| || ||||| ||||| || ||||| || | |||| || || || Sbjct 24448278 GAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGCCTCAGCTACCTGA 24448337 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || |||||||| || ||||| || || || || || || || || ||| || || Sbjct 24448338 ACTTCCTTCATAAAACGGCCAGCGAGATTTTCAAGAACTATACCATCAGAGGCAGCAAAG 24448397 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || || || |||||||||| ||| ||| | || | |||| ||| || Sbjct 24448398 AAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCCAATGG-CG 24448456 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | | || ||| || ||||||||||| ||||| | || |||||||| || ||||| Sbjct 24448457 GAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTCGGCTTTCTTGTA 24448516 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||||||||||| ||| | || | || ||||| Sbjct 24448517 CATCTCCCATATTTGTGGATATTGAATTGGGAA 24448549 Score = 87.8 bits (96), Expect = 2e-11 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| || || | | ||| || || || ||||| || | ||||||||| Sbjct 24447684 GCCTTCTGGTACTCTCCAACTCTCTTCTCAAAGAAATTCGTCTTCCCTTGCAGCGAGATC 24447743 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 ||||||||||| || ||||| | | ||||| ||| ||||||| || | | Sbjct 24447744 AACTCCATCCAATCAAAAGGGTTAGCCACATTGTATATCTTCCCGCATCCAAGTGCATCC 24447803 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | || | || || || ||||| |||||||||| ||| || | ||||||| || | Sbjct 24447804 AACAACCTATCAGCCACGAACTCAATGTACTGGCTCATCAGTTCCCCGTTCATCCCTACC 24447863 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 | ||| || |||| |||| |||||| || |||| || || || || || Sbjct 24447864 AACGCACAGGGAAGCGCGTCGCACACAAATTCCCTCTCAATATCCACTGCGTC 24447916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106973511405023