Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq17 104 2e-17 seq10 95.1 1e-14 seq2 93.3 3e-14 >seq17 Length=27373735 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| || ||||| || || |||||| | || ||| | Sbjct 16111872 ATGCAGATCTTTGTGAAAACCTTGACCGGAAAGACTATTACCCTTGAGGTCGAGAGCAGC 16111931 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| ||||| ||||| | ||| ||||| Sbjct 16111932 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGAATTCCCCCAGATCAG 16111991 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||| | ||| || |||||||||||||| | | | ||| | || ||||| ||| Sbjct 16111992 CAAAGGCTTATCTTTGCCGGAAAACAGCTGGAGGACGGCCGCACATTAGCCGATTATAAC 16112051 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || |||||||| | ||| | ||| | | ||||| || || Sbjct 16112052 ATTCAGAAGGAATCTACCCTTCACCTCGTGCTTCGTCTGCGTGGAGG 16112098 >seq10 Length=26335333 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || ||||| | |||||||| |||||||| |||| ||| Sbjct 23443690 AATATGCAGATTTTCGTTAAAACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGAGC 23443631 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 |||||| ||| | | || ||| ||||| ||||| ||||| | || |||| Sbjct 23443630 TCCGATACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCGGAT 23443571 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || |||||| | || | ||| ||||||||||| || |||| | | || |||| ||||| Sbjct 23443570 CAGCAAAGATTGATCTTTGCCGGTAAACAGCTTGAAGATGGCCGCACTTTGGCCGATTAT 23443511 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| || || || ||||| Sbjct 23443510 AACATCCAGAAGGAGTCTAC 23443491 >seq2 Length=32417782 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| |||||| | || |||||||| ||||| |||| ||| || ||||| |||| Sbjct 15025632 GACAAGGAAGGCATTCCTCCTGATCAACAGAGACTGATTTTTGCTGGAAAACAATTGGAA 15025573 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||||| |||| ||||||||||| ||||| || || || | ||| |||| || Sbjct 15025572 GATGGTAGAACATTGGCTGATTACAACATCCAAAAGGAGTCGACTCTTCACCTGGTTTTG 15025513 Query 110486 AGACTGCGAGGGGGAA 110501 || || | || |||| Sbjct 15025512 AGGCTTAGGGGAGGAA 15025497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412831441387367