Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq17 91.5 1e-13 seq10 89.7 4e-13 seq11 86.0 5e-12 seq2 86.0 5e-12 >seq17 Length=27373735 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| ||||| || || || || || |||||| | || ||| || Sbjct 16111872 ATGCAGATCTTTGTGAAAACCTTGACCGGAAAGACTATTACCCTTGAGGTCGAGAGCAGC 16111931 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || |||||| || || ||||| | ||| |||||| Sbjct 16111932 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGAATTCCCCCAGATCAG 16111991 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || ||||| | ||| || |||||||||||||||| | ||| | || || || ||| Sbjct 16111992 CAAAGGCTTATCTTTGCCGGAAAACAGCTGGAGGACGGCCGCACATTAGCCGATTATAAC 16112051 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||| ||||| | ||| | ||| Sbjct 16112052 ATTCAGAAGGAATCTACCCTTCACCTCGTG 16112081 >seq10 Length=26335333 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GC 107611 || ||||| ||||| || ||||| | || ||||| |||||||| |||| ||| || Sbjct 23443690 AATATGCAGATTTTCGTTAAAACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGAGC 23443631 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 | |||||| ||| | | || ||| ||||| || || ||||| | || ||| Sbjct 23443630 TC-CGATACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCGGA 23443572 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 |||||| ||| | || | ||| ||||||||||| || || | | || |||| || || Sbjct 23443571 TCAGCAAAGATTGATCTTTGCCGGTAAACAGCTTGAAGATGGCCGCACTTTGGCCGATTA 23443512 Query 107732 CAACATTCAAAAGGAGTCTAC 107752 ||||| || ||||||||||| Sbjct 23443511 TAACATCCAGAAGGAGTCTAC 23443491 >seq11 Length=27369018 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || |||| || ||||| |||||| | || || | Sbjct 5723680 ATGCAGATATTTGTGAAGACCCTAACGGGTAAAACAATTACCCTGGAGGTTGAAAGTTCT 5723739 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | | || || |||||| || || || ||| | || || ||| Sbjct 5723740 GATACTATTGACAATGTCAAGGCAAAGATCCAAGACAAGGAGGGCATCCCACCTGACCAG 5723799 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| ||||| ||||||||||| | | ||| | || ||||||||| Sbjct 5723800 CAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACACTTGCAGACTACAAC 5723859 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| |||||||| || | ||| ||||| Sbjct 5723860 ATTCAGAAGGAGTCCACCCTCCACTTGGTG 5723889 >seq2 Length=32417782 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 || || |||||| | || ||||| |||||||| |||| ||| || ||||| |||| Sbjct 15025632 GACAAGGAAGGCATTCCTCCTGATCAACAGAGACTGATTTTTGCTGGAAAACAATTGGAA 15025573 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | |||| |||| || |||||||| ||||||||||| || | ||| |||| ||| Sbjct 15025572 GATGGTAGAACATTGGCTGATTACAACATCCAAAAGGAGTCGACTCTTCACCTGGTTTTG 15025513 Query 107769 AG 107770 || Sbjct 15025512 AG 15025511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398866985013091