Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq1998 221 1e-52 seq14 154 2e-32 seq10 109 6e-19 seq11 100 3e-16 seq287 96.9 4e-15 >seq1998 Length=1172 Score = 221 bits (244), Expect = 1e-52 Identities = 312/436 (72%), Gaps = 2/436 (0%) Strand=Plus/Minus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 ||||| | ||| |||| ||| | |||||| | || |||| ||||| ||||| | Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACC 157169 ||||| || || || | | |||||| |||| || ||| | || ||| | || || || Sbjct 375 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCC 317 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229 ||| || ||||| || |||||||| ||||| ||| |||| ||||| | ||||| ||||| Sbjct 316 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 257 Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCAT 157289 || || |||||||| || ||||| |||| || || ||| | || || ||||| || Sbjct 256 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 197 Query 157290 CTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGT 157349 |||||||| ||||| ||||||| ||| | ||||| || ||||||| | || | || Sbjct 196 ATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 137 Query 157350 CTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 157409 | |||||| | | || | | || ||||| ||||||||||||||| || ||| Sbjct 136 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 77 Query 157410 TTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGC 157469 | | ||||||||||| ||||| |||||| || || || || || || ||||| | ||| Sbjct 76 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 17 Query 157470 AGTATTCCTCGTCTAT 157485 || ||| | ||||| Sbjct 16 TGTTTTCTTGATCTAT 1 >seq14 Length=24855542 Score = 154 bits (170), Expect = 2e-32 Identities = 185/249 (74%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 159444 ACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 159503 ||||||| || || |||||||| |||||||| || |||||||| | || || ||||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 159504 GGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATG 159563 || |||| ||||| | || | ||| | |||||||||||||| ||||| || || | | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 159564 GGTCTATGGACATCCAGTATTGGCATTA-TTGGTCTTGCTCTCAATCTTCGTGCTTACGA 159622 ||| |||||| | | | || |||| | ||||| |||| ||| | ||||| || || Sbjct 952085 GGTTTATGGATGAGCGCTCTCGG-ATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGA 952027 Query 159623 TTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAA 159682 ||||| ||| | ||| | |||||||||||||| |||||||| || ||||||| || Sbjct 952026 CTTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAA 951967 Query 159683 GAACATTCT 159691 || ||||| Sbjct 951966 AAATATTCT 951958 >seq10 Length=26335333 Score = 109 bits (120), Expect = 6e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 158180 ACTCCTGAGGGAGAAACAGTTATCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 158239 ||||| ||||| ||| | || |||| ||| ||| || ||||| |||||| Sbjct 23499936 ACTCCAGAGGGTGAAGTGGAAATAGAGTGCCCAGATGATGTTTATATTCTTGACGCATTT 23499995 Query 158240 GAAGAAGCAGGAGTTGATATTAACTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCA 158299 |||||||| || ||||| | ||||| || | || ||| |||||||||| |||||| Sbjct 23499996 GAAGAAGCTGGTATTGATCTGCCATACTCATGCAGGGCAGGTTCTTGCTCTTCCTGTGCA 23500055 Query 158300 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCGTTCCTAGACGATGATCAA 158359 || ||||||||| |||||| | || ||| |||| | ||||| || ||||| || Sbjct 23500056 GGGAAAATTGTAGGAGGAACTCTAGACCAGTCTGATGGGAGCTTCCTTGAAGATGACCAG 23500115 Query 158360 ATCGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACATCTGATTGTGT 158412 || | ||| || | ||||| || ||||| || || || ||||||||||| Sbjct 23500116 ATGGAAGCTGGCTGGGTTCTCACTTGTGTTGCTTACCCTCAGTCTGATTGTGT 23500168 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 158222 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAACTACTCTTGTCGTGCTGGT 158281 ||||| || |||||||||||| | |||||||| || | ||||| || | ||||| Sbjct 7997424 TACATCCTCGACGCAGCAGAAAATGCAGGAGTAGAGCTGCCATACTCATGCAGAGCTGGG 7997365 Query 158282 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158341 || |||||| | ||||| || | | || ||||| |||| || || ||| ||| Sbjct 7997364 GCCTGCTCTACTTGTGCCGGGCAGCTGGTTACTGGATCTGTGGACCAATCAGATGGGTCA 7997305 Query 158342 TTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158401 || || |||| || ||||| | | || | ||| ||||| || || | |||||||| Sbjct 7997304 TTTCTCAACGAGGAGCAAATGGAAAAGGGTTATGTGCTTACCTGCGTCTCTTATCCAACT 7997245 Query 158402 TCTGATTGTGTTGTT 158416 || ||||||||| || Sbjct 7997244 TCAGATTGTGTTATT 7997230 >seq11 Length=27369018 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 158222 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAACTACTCTTGTCGTGCTGGT 158281 ||||| ||||| || || || | ||||||||||| | ||||||||| | ||||| Sbjct 27029556 TACATCCTAGATGCGGCTGAGAATGCAGGAGTTGAGCTACCCTACTCTTGCAGGGCTGGA 27029615 Query 158282 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158341 ||||||||| | ||||| || || || || || || | |||||||| |||| || Sbjct 27029616 GCTTGCTCTACTTGTGCTGGGAAGATGGTGTCAGGCTCAGTTGATCAATCTGATGGTTCC 27029675 Query 158342 TTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158401 ||||| || || ||||||| | | || | | | || || ||||| | || ||||| Sbjct 27029676 TTCCTGGATGAGAATCAAATGGAGGGGGGTTATCTGCTGACTTGTGTTTCTTACCCAACT 27029735 Query 158402 TCTGATTGTGTTGTT 158416 || ||||||||| || Sbjct 27029736 TCAGATTGTGTTATT 27029750 >seq287 Length=58314 Score = 96.9 bits (106), Expect = 4e-15 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 157378 TATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTT 157437 || ||||| ||||||||||||||| || || || ||||| | || ||||| | |||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 157438 GCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAA 157497 || || || || | || || |||| | | || ||| | ||||||| | ||| | Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 157498 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTC 157557 || || || || ||||| || || | || | || ||| |||| ||| | || Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 157558 TTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTA 157617 ||| |||| |||||||| || |||||||| || || ||||| | ||||| ||| ||| Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGTA 44415 Query 157618 T 157618 | Sbjct 44414 T 44414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545259838657520