Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq1998 194 2e-44 seq14 123 3e-23 seq10 114 2e-20 seq151 102 1e-16 seq287 100 3e-16 seq560 82.4 9e-11 seq4 82.4 9e-11 >seq1998 Length=1172 Score = 194 bits (214), Expect = 2e-44 Identities = 292/410 (71%), Gaps = 4/410 (1%) Strand=Plus/Minus Query 177585 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177644 ||||| || || | || ||||| || || ||||||| || ||| | ||| | |||||| Sbjct 408 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 349 Query 177645 ATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGA 177703 |||| || || |||| ||| | ||||| || || || || || || || || ||||| Sbjct 348 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGA 290 Query 177704 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATC 177763 ||| || |||| || || | ||||| ||||| || || |||||||| || | || | Sbjct 289 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 230 Query 177764 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 177823 ||| || || ||| | || || || || || |||||||| ||||| ||||||| || Sbjct 229 TTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAATG 170 Query 177824 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGC 177883 | | || || || ||||||| | || | || | |||||| | | || | | Sbjct 169 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 110 Query 177884 ATATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGT 177943 || ||||| ||||||||||||||| | |||||| ||||||||||| ||||| ||| Sbjct 109 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 50 Query 177944 TGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTAT 177992 |||||| || || ||||||||||| || | || || ||||| | ||||| Sbjct 49 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTAT 1 >seq14 Length=24855542 Score = 123 bits (136), Expect = 3e-23 Identities = 176/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 179608 ACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTC 179667 || |||| || || || ||||| ||||| || || ||||| |||| || || ||||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 179668 GGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATG 179727 |||||| | ||| | |||| | |||||| || ||||||| | | ||||| || || | | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 179728 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGAT 179787 ||| | ||| | || | || | | || || |||| ||| | ||||| ||||| Sbjct 952085 GGTTTATGGATGAGCGCTCTCGGATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGAC 952026 Query 179788 TTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAG 179847 || || ||| | ||| | ||||||||||||||||| || ||||| ||||| | || Sbjct 952025 TTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAA 951966 Query 179848 AACATTCT 179855 || ||||| Sbjct 951965 AATATTCT 951958 >seq10 Length=26335333 Score = 114 bits (126), Expect = 2e-20 Identities = 166/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 138529 GATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGT 138588 |||||| || || ||||| || ||| ||||| ||||||||||| || ||||| || Sbjct 23499969 GATGATGTTTATATTCTTGACGCATTTGAAGAAGCTGGTATTGATCTGCCATACTCATGC 23500028 Query 138589 CGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCT 138648 | || ||| | || ||| ||||||| || ||| | || | ||||||| |||| |||||| Sbjct 23500029 AGGGCAGGTTCTTGCTCTTCCTGTGCAGGGAAAATTGTAGGAGGAACTCTAGACCAGTCT 23500088 Query 138649 GACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCA 138708 || | |||||||| |||||||| || | ||| || | | | ||||| || || Sbjct 23500089 GATGGGAGCTTCCTTGAAGATGACCAGATGGAAGCTGGCTGGGTTCTCACTTGTGTTGCT 23500148 Query 138709 TACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTG 138761 ||||| || |||||| | ||||| || | || || || || || ||||| Sbjct 23500149 TACCCTCAGTCTGATTGTGTCATTGAGACACACAAGGAAGAAGAGCT-TACTG 23500200 >seq151 Length=113734 Score = 102 bits (112), Expect = 1e-16 Identities = 328/503 (65%), Gaps = 17/503 (3%) Strand=Plus/Minus Query 177922 GTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCT 177981 ||||| | || ||||| | ||||||||| || || | ||||||| | ||| || | Sbjct 4821 GTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTGCAATTATTGT-T 4763 Query 177982 TTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCT 178040 |||| | ||||||| | ||| | || || || || ||||||||| || | | | Sbjct 4762 TTCTTGATCTATCCAATTGGTTAGGGAAGTTTTTCTTATAGTATGCCTCTAGGAAGTTTT 4703 Query 178041 GGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTC 178100 |||| ||| |||| ||| |||||||| | | | ||||| |||||| | ||||| || Sbjct 4702 GGTATTTTCAACTTTATGATTGTATTCTAGACTAAGCACAACATCCTTGTACACCCATTT 4643 Query 178101 CACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTT-TTCTCTGCTATGCATGGAAG 178159 ||||| | || || ||| | |||| ||| |||||||||| | Sbjct 4642 CACATATTAGGCGTA--------ATTACAACAACTTCTTATTCAATGCTATGCATCGTTC 4591 Query 178160 TCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTA 178219 | | || ||| | | || || ||| ||| | | ||| || | |||| Sbjct 4590 CTTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCGCTAATGAAAGTTA 4531 Query 178220 CAAGTTCGGACAAGAAG--AAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCGGT 178277 || ||| | || || || |||| ||||| ||| | || || |||||||| || || Sbjct 4530 CAGATTCAGTTAAAGAGGAAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGC 4471 Query 178278 CGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCA 178337 || |||| |||||||| | || ||||||||||| | ||| | || || ||||| | Sbjct 4470 CGATTGAACTTCCAATGT--AT--TTCAACAACTCTCATTCTTTACATTTTTTCCTAGTT 4415 Query 178338 GCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTAAC 178397 || |||||| |||| || || | ||| || | | | | || ||| | |||||| Sbjct 4414 GCTTGGCCTATAGTAGGTATTTAGTTTACTATTTTCGATATTAGCATTATGTCTTTTAAC 4355 Query 178398 CTCAATGGATTCAACTTCAACCA 178420 || |||| || || |||||||| Sbjct 4354 CTAAATGATTTTAATTTCAACCA 4332 >seq287 Length=58314 Score = 100 bits (110), Expect = 3e-16 Identities = 311/475 (65%), Gaps = 16/475 (3%) Strand=Plus/Minus Query 177895 GTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTG 177954 |||||||| ||||| | | || ||||| | || ||||| | ||||||||| || | Sbjct 18096 GTGAGTGGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTTGTTGCATATTCAG 18037 Query 177955 CACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTC 178013 | | ||||||| | | || ||||| | ||||||| | || | || | || Sbjct 18036 CTCGTGTTGCAACTACTATTATTGT-TTTCTTGATCTATCCAATTGGCTAGGGATGTTTT 17978 Query 178014 TCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCA 178073 || || ||||||||| || | || || || ||| |||| | | |||||||| | | Sbjct 17977 TCTTATAGTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATTGTATTCTAGACT 17918 Query 178074 GAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGA 178133 || ||||| |||||||| ||||| || ||||| || || ||| | Sbjct 17917 GAGCACAACATCCTTATACACCCATTTCACATATCAGGCGTA--------ATTACACCAA 17866 Query 178134 TCTCTT-TTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGAC 178192 |||| ||| |||||||||| | | | || ||| | | || || || Sbjct 17865 CTTCTTATTCAGTGCTATGCATCGTTCCTTGATAACCTCTAGTTTGATAAAGGAAACCAC 17806 Query 178193 AGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAA-GAAGAAGAAACATATAACA 178251 | ||| | | ||| || | |||||| ||| | || || ||| |||| ||||| | Sbjct 17805 ATAAAATAAATCCGCTAATGAAAGTTACATATTCAGTTAAAGAGGAAAAAACTTATAATA 17746 Query 178252 TCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACT 178311 || | || || |||||||| || || || |||| |||||||||| || |||||||||| Sbjct 17745 TCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAATAT--AT--TTCAACAACT 17690 Query 178312 CCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCAC 178366 | | ||| | || || ||||| | || |||||| |||| || || | ||| || Sbjct 17689 CTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATTTAGTTTAC 17635 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 177885 TATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTT 177944 || ||||| ||||||||||||||| | || ||| ||||| | || ||||| | |||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 177945 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCA 178003 ||||| || || | ||||||| | || | | ||||| | ||||||| | ||| | Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGC-TATTATGGTTTTCTTGATCTATCCAATTGGTTA 44536 Query 178004 AGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 178063 || || || || ||||| || || | || | || ||| |||| || |||| Sbjct 44535 GGGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGT 44476 Query 178064 ATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACAT 178105 |||| | || || ||||| |||||||||||||| || ||||| Sbjct 44475 ATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 44434 >seq560 Length=20368 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 177957 CCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTC 178015 ||||||||||| || | || | ||||| | ||||||| | ||||| || || || Sbjct 20253 CCTGTTGCAGCTGCTACTGCTCT-TTTCTTGATCTATCCAATTGGTCAGGGAAGCTTTTC 20311 Query 178016 CGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGC 178072 |||| ||||||||| || |||||||||||||| |||| ||| |||||||||| || Sbjct 20312 TGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGC 20368 >seq4 Length=28735499 Score = 82.4 bits (90), Expect = 9e-11 Identities = 169/248 (68%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 |||||| ||||||||| ||||| || ||||| || || || || |||| || Sbjct 464514 TTTGACGCAGCTGATGATACATACATTCTAGATGCAGCCGAGAGTGCTGGAGTTGAGCTG 464455 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636 || || || || | || || || || ||||| |||||||| || | || || | Sbjct 464454 CCATATTCTTGCAGGGCAGGGGCTTGCTCTACGTGTGCTGGGAAGATGGTGTCGGGCTCA 464395 Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCA-- 138694 || || |||||||| || ||||| ||||| ||| | || ||| | ||||| Sbjct 464394 GTCGACCAGTCTGATGGTTCCTTCCTGGATGA-GACTCAGATG-AGCGAGGGTTATCTGC 464337 Query 138695 TGACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAAC 138754 ||||||||||| | ||||| || || |||||| | ||| | ||| | || ||| |||| Sbjct 464336 TGACTTGCGTATCGTACCCGACTTCAGATTGTGTGATTCACACTCACAAGGAGAGTGAAC 464277 Query 138755 TATACTGA 138762 | | |||| Sbjct 464276 TTTGCTGA 464269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605651914474040