Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq10 98.7 1e-15
seq16 91.5 1e-13
seq11 82.4 7e-11
seq2 82.4 7e-11
>seq10
Length=26335333
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 137194 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 137253
|| || | ||| | ||| | || ||||| || |||||||||||||| | || |||
Sbjct 23442786 AATCGGAGAACGAGATGCAAGGTGGATTCCTTCTGTATGTTGTAATCAGCGAGGGTCCTC 23442845
Query 137254 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 137313
|| || || || || || ||| |||||||||| ||||| || ||||| ||||||||
Sbjct 23442846 CCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCC 23442905
Query 137314 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTC 137373
||||| || || ||| | | || | ||||| | | ||| || || | ||
Sbjct 23442906 TTGTCCTGGATCTTGGCTTTAACATTGTCGATTGTGTCGGAGCTTTCAACCTCTAGGGTT 23442965
Query 137374 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415
| ||||||||||||| ||||| ||||| || |||||| ||
Sbjct 23442966 ATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCATACCT 23443007
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243
||| || || | ||| | || | ||| | ||||| || || || ||||| ||||||
Sbjct 23443460 GCCGCCACGGAGACGGAGGACAAGATGGAGAGTAGACTCCTTCTGGATGTTATAATCGGC 23443519
Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
|| |||| ||||| || |||||||| ||| |||||| | ||||||||| || ||
Sbjct 23443520 CAAAGTGCGGCCATCTTCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGTGG 23443579
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
|| ||||| ||||| || || ||| | | || | || || | | || ||
Sbjct 23443580 AATCCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTATCGGAGCTCTCGAC 23443639
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
|| | ||| | ||||||||||| | ||||| ||||| || ||||||
Sbjct 23443640 CTCGAGAGTAATGGTCTTGCCGGTGAGGGTTTTAACGAAAATCTGCATA 23443688
>seq16
Length=28979753
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
||||| || | ||| | || | |||| ||||| |||||||| || || ||||| |
Sbjct 1160195 CCTCCACGCAGACGGAGCACAAGGTGAAGGGTAGACTCTTTTTGAATATTATAATCAGCC 1160254
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| |||| ||||||||| || || || || |||| || | |||||| || |||||
Sbjct 1160255 AAAGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGCCTTTGCTGGTCTGGAGGA 1160314
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| ||||| ||| || || | | || | ||||| || || ||
Sbjct 1160315 ATTCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCCACC 1160374
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
|| | || | |||||||||||||| ||||| ||||| || ||||||
Sbjct 1160375 TCGAGGGTAATAGTCTTGCCGGTCAAGGTTTTCACGAAGATCTGCATA 1160422
>seq11
Length=27369018
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243
|||||| || | || | || ||||||| || || || ||||| || ||||| ||
Sbjct 5723223 GCCTCCACGAAGGCGGAGCACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGC 5723164
Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
| |||| || || || || ||||||||| ||||||| | ||||| || || ||
Sbjct 5723163 AAGGGTGCGGCCATCCTCTAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTGG 5723104
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
|| ||||||||||| || || |||| | || | ||||||| ||| ||
Sbjct 5723103 AATACCTTCTTTGTCCTGGATCTTAGCCTTTACATTGTCAATGGTGTCTGAACTTTCCAC 5723044
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | ||| | ||||||||||| | |||||||| || || |||||
Sbjct 5723043 CTCCAAAGTGATTGTCTTGCCGGTGAGAGTTTTTACAAAGATCTGCAT 5722996
>seq2
Length=32417782
Score = 82.4 bits (90), Expect = 7e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258
|||||| | |||| || || || ||||| ||||||||||| || ||| || ||
Sbjct 15025513 CAAAACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCAGCCAATGTTCTACCATC 15025572
Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318
||| | |||||| |||||| | ||||| | || ||||| ||||| |||||||| |||||
Sbjct 15025573 TTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGTTGATCAGGAGGAATGCCTTCCTTGTC 15025632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488531670370800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |