Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5 109 4e-19 seq13 102 5e-17 seq17 100 2e-16 seq16 96.9 2e-15 seq11 96.9 2e-15 seq4 95.1 8e-15 seq1 95.1 8e-15 seq12 86.0 4e-12 seq10 86.0 4e-12 >seq5 Length=28438989 Score = 109 bits (120), Expect = 4e-19 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||||||| | |||||| || ||||| ||| || || |||||||| || | Sbjct 727731 CCACCCCTCAAACGCAGCACCAAGTGGAGAGTTGACTCCTTCTGAATGTTGTAGTCTGCA 727672 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || |||| ||||||||| || || || | ||||||||||| | || Sbjct 727671 AGGGTCCGTCCATCTTCCAGTTGTTTTCCTGCGAAGATGAGGCGCTGCTGATCCGGTGGG 727612 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | ||||| ||| | ||||| ||||| || Sbjct 727611 ATTCCCTCCTTGTCTTGGATCTT-GGCCTTAACATTGTCGATAGTGTCCGAGGATTCTAC 727553 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755 || | || || || ||||| |||| ||||| || ||||||||||| |||| Sbjct 727552 CTCGAGAGTTATGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATCTTTGG 727499 >seq13 Length=28119335 Score = 102 bits (112), Expect = 5e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | ||||| ||| |||||| ||| || || ||||||||||| | | Sbjct 2662434 CCGCCTCGGAGACGAAGCACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCG 2662375 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || ||||| || |||| ||||||||||| | || Sbjct 2662374 AGAGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGATCGGGAGGG 2662315 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | |||| ||| | ||||| || || || Sbjct 2662314 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACATTGTCGATAGTGTCCGAAGACTCAAC 2662256 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 || | || ||||| || || |||| ||||| || ||||||||||| |||| Sbjct 2662255 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATGGTTG 2662203 >seq17 Length=27373735 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| ||||| ||||||||||| | | || || |||| || | ||| Sbjct 16111846 TGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGCCAAGGTACGGCCGTCCTCAAGTTGC 16111787 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||||||||| || | ||||||||| ||| | || | ||||||||| || ||||| Sbjct 16111786 TTTCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGGATACCTTCTTTATCCTGGATTTT- 16111728 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | || || | ||| | ||||||||| || || || | ||||| ||||| || || Sbjct 16111727 GGCTTTGACGTTGTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTTTTTCCGGT 16111668 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 16111667 GAGGGTCTTAACGAAGATCTGCAT 16111644 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || ||||| ||||||| | |||||| |||| |||| |||||||||||||| Sbjct 16112062 TCCTTCTGAATGTTATAATCGGCTAATGTGCGGCCGTCCTCCAGCTGTTTTCCGGCAAAG 16112003 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | | ||||||||| | || | ||||| ||||| ||| || | | || | Sbjct 16112002 ATAAGCCTTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGAATCTT-AGCCTTGACGTT 16111944 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | ||||||||| || || |||| || || || || || || || ||||| || Sbjct 16111943 GTCAATGGTGTCGCTGCTCTCGACCTCAAGGGTAATAGTCTTTCCGGTCAAGGTTTTCAC 16111884 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 16111883 AAAGATCTGCAT 16111872 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || ||||||||||| | | || || | || |||| || || ||||| || Sbjct 16112290 TCCTTCTGAATGTTGTAATCAGCCAAAGTCCGGCCATCTTCCAGCTGCTTCCCGGCGAAG 16112231 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| | |||||||||| | || | |||||| ||||| |||||| || | ||||| Sbjct 16112230 ATCAGCCTCTGCTGATCTGGTGGGATACCTTCCTTGTCCTGAATTTT-TGCCTTAACATT 16112172 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||||||| ||||| || | || || ||||| || || || || || || Sbjct 16112171 ATCAATGGTGTCGCTGCTCTCCACCTCCAGGGTAATAGTTTTTCCAGTCAAGGTCTTCAC 16112112 Query 33738 AAAGATCTGCAT 33749 || |||||||| Sbjct 16112111 GAAAATCTGCAT 16112100 >seq16 Length=28979753 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||| | ||| |||||| || ||||| ||||||||||| | | ||||| | || || Sbjct 1159984 CACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGCCAAAGTGCGGCCATCTTC 1160043 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || ||| |||||||| || |||| | |||||| ||| | || | || || || || Sbjct 1160044 CAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTG 1160103 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 |||||| || | || | || | ||||||||| |||||| || | || || |||| Sbjct 1160104 AATTTT-TGCCTTGACGTTATCAATGGTGTCGCTGCTTTCCACCTCCAAGGTAATAGTTT 1160162 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || || || |||||||||||| Sbjct 1160163 TCCCAGTCAAGGTCTTAACGAAGATCTGCATA 1160194 >seq11 Length=27369018 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||||||| || ||| ||| ||||| || ||||| || | || ||||| | || || Sbjct 5723205 CACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGCAAGGGTGCGGCCATCCTC 5723146 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || ||||| |||| | |||||| ||| | || | |||||||||||| Sbjct 5723145 TAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTG 5723086 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTCCACGTCAACCGTGATCG 33715 || || | | |||| ||| | |||||| ||| |||||| || | ||||| | Sbjct 5723085 GATCTT-AGCCTTTACATTGTCAATGGTGTC---TGAACTTTCCACCTCCAAAGTGATTG 5723030 Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | |||||||||||||||||||| Sbjct 5723029 TCTTGCCGGTGAGAGTTTTTACAAAGATCTGCAT 5722996 >seq4 Length=28735499 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | || | ||||| || || ||| |||||| || || ||||| || | Sbjct 24493885 CCACCTCGAAGGCGGAGCACCAGGTGGAGGGTGGACTCTTTCTGGATATTGTAGTCTGCA 24493944 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || || | || || || ||||| ||||| | |||||| || | || Sbjct 24493945 AGTGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGA 24494004 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGA---TTC 33698 | || |||||||| ||||| ||| ||||| |||| |||||| ||| ||| Sbjct 24494005 ATTCCCTCTTTGTCCTGGATTTTAGCTTT-AACATTGTCAATGGTGTC---TGAGCTTTC 24494060 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | ||||| || || || |||| ||||| || ||||||||||| Sbjct 24494061 CACCTCCAGGGTGATTGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 24494111 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| ||| || || |||||||| || | || ||||| | || || Sbjct 24493218 CACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTGCGGCCATCCTC 24493277 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || ||||||||||| | |||||| ||| | || | ||||||||||| Sbjct 24493278 AAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATCCCTTCTTTGTCCTG 24493337 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 |||||| | | |||| ||| | |||||| ||| || || | ||||| || | Sbjct 24493338 AATTTT-GGCCTTGACATTGTCAATGGTGTCCGAACTTTCAACCTCCAAGGTGATTGTCT 24493396 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| | || || ||||| |||||||| Sbjct 24493397 TCCCTGTAAGGGTCTTAACAAATATCTGCAT 24493427 >seq1 Length=34959721 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || ||||| || ||||||| ||| ||||| ||| || || |||||||| |||| Sbjct 31554284 CCGCCCCTCAAGCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGCA 31554343 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | ||||||||| || || || | |||||||| || | || Sbjct 31554344 AGGGTCCGGCCGTCTTCTAGTTGTTTTCCAGCGAAGATGAGGCGCTGCTGGTCCGGTGGA 31554403 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || |||| ||| ||| | ||||| || || || Sbjct 31554404 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCA-CATTGTCGATAGTGTCCGAAGACTCTAC 31554462 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755 || | || || || ||||| |||| ||||| || ||||||||||| |||| Sbjct 31554463 CTCTAGAGTTATGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATCTTTGG 31554516 >seq12 Length=31596830 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || ||||| ||| || || ||||||||||| | ||| ||||| | || || Sbjct 2046807 CACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCGAGAGTGCGGCCATCCTC 2046748 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || || ||||| | ||||||||||| | || | ||||| || || Sbjct 2046747 CAGCTGCTTCCCTGCGAAAATTAGTCGCTGCTGATCGGGAGGAATTCCTTCCTTATCCTG 2046688 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || | | |||| ||| | |||||| || || || || | || ||||| | Sbjct 2046687 GATCTT-GGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCTAGGGTTATCGTCT 2046629 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 | || |||| ||||| || ||||||||||| |||| Sbjct 2046628 TCCCCGTTAGGGTTTTCACGAAGATCTGCATGGTTG 2046593 >seq10 Length=26335333 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || ||||| || | || | ||| | ||| || || |||||||||||||| | | Sbjct 23442777 CCGCCCCTCAATCGGAGAACGAGATGCAAGGTGGATTCCTTCTGTATGTTGTAATCAGCG 23442836 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || |||| || ||||||||||| |||| ||||||||| || | || Sbjct 23442837 AGGGTCCTCCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGA 23442896 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || | || ||||| ||| | |||||| ||| || Sbjct 23442897 ATGCCTTCCTTGTCCTGGATCTT-GGCTTTAACATTGTCGATTGTGTCGGAGCTTTCAAC 23442955 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || || || || || | ||||| || |||||||||||| Sbjct 23442956 CTCTAGGGTTATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCATA 23443004 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||||||| | || | ||| |||||| || || ||||| || || |||| Sbjct 23443004 ACCTCCCCTCAAACGCAGAACAAGATGCAGAGTGGATTCCTTCTGTATATTATAGTCGGC 23443063 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | ||| |||||||| || |||| | |||||| || | || Sbjct 23443064 AAGGGTTCGGCCATCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGG 23443123 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || ||| ||||| || | ||||||| ||||| Sbjct 23443124 AATGCCTTCCTTGTCCTGGATCTTGGCTTT-AACATTATCGATGGTGTCGGAACTTTCCA 23443182 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || ||||| || || || | || || || |||||||||||| Sbjct 23443183 CCTCCAAGGTTATCGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATA 23443232 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| ||||| |||||||||| || | || | |||| || | ||| |||||||| || Sbjct 4732544 CTCCTTTTGCATGTTGTAATTGGCCAAGGTACAGCCGTCCTCAAGTTGCTTTCCGGCGAA 4732485 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||| ||| | || | ||||||||||| ||||| | || | | Sbjct 4732484 GATGAGACGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCCTAGATTTT-GGCTTTGATGT 4732426 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCG-TGATCGTTTTACCTGTTAACGTTTTT 33735 ||| | ||||||||| | || || |||| | | || ||||| || || | || || Sbjct 4732425 TGTCGATGGTGTCGCTGCACTCGACCTCAAGAGTTAATGGTTTTTCCAGTGAGAGTCTTA 4732366 Query 33736 ACAAAGATCTGCAT 33749 || ||||||||||| Sbjct 4732365 ACGAAGATCTGCAT 4732352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328695911724480