Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq1998 172 2e-38 seq287 125 2e-24 seq151 96.9 1e-15 >seq1998 Length=1172 Score = 172 bits (190), Expect = 2e-38 Identities = 284/404 (70%), Gaps = 7/404 (2%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| |||||||| ||||||| || | | | | || || Sbjct 408 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 349 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || ||||| || |||||||| || || || || || |||||||| || || || Sbjct 348 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGA 290 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || || |||||||||||||| || || || || ||| | |||| | Sbjct 289 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 230 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | || || || || | || || |||||||| |||||||| || |||||||| Sbjct 229 TTCTGCG--GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAA 172 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||| | ||||| || || || | | || | || | |||||| | |||| | | Sbjct 171 TGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 112 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888 ||||||||| || |||||||||||||| | || || || ||| | ||||||||| | Sbjct 111 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCT 52 Query 19889 GTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCT 19932 ||||| || || ||||| |||||||| || |||| || ||||| Sbjct 51 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCT 9 >seq287 Length=58314 Score = 125 bits (138), Expect = 2e-24 Identities = 175/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||||||||| || ||||||||||||| | ||||||| | ||| | |||||||||| ||| Sbjct 44655 TTACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGT 44596 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || || |||| |||||| | || | ||| ||||| | |||| || ||||| Sbjct 44595 TGCATATTCAGCTCATGTTGCAACTGCTATTATGGT-TTTCTTGATCTATCCAATTGGTT 44537 Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009 |||| ||||| || || ||||| | || | || || ||||||| || | | Sbjct 44536 AGGGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTG 44477 Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTG 20069 ||||| | || || || ||||| || |||||||| || ||||| | || || ||||| Sbjct 44476 TATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTG 44417 Query 20070 TAT 20072 ||| Sbjct 44416 TAT 44414 Score = 109 bits (120), Expect = 2e-19 Identities = 321/485 (66%), Gaps = 20/485 (4%) Strand=Plus/Minus Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 |||||| || | |||||| |||||| | | |||| | ||| | |||||||||| ||| Sbjct 18107 TTACATAGGTGGTGAGTGGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTTGT 18048 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || || |||| |||||| | | | || ||||| | |||| || |||| Sbjct 18047 TGCATATTCAGCTCGTGTTGCAACTACTATTATTGT-TTTCTTGATCTATCCAATTGGCT 17989 Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009 |||| | || || || ||||||| | || | || | || ||||||| | | | | Sbjct 17988 AGGGATGTTTTTCTTATAGTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATTG 17929 Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTG 20069 ||||| | | || || ||||| || || ||||| || ||||| | ||| || Sbjct 17928 TATTCTAGACTGAGCACAACATCCTTATACACCCATTTCACATA-----TCAGGC--GTA 17876 Query 20070 TATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TG 20128 | | | |||||||||| ||||| |||| |||| || || | ||| | Sbjct 17875 ATTACACCAACTTCTTATTCAGTGCTATGCATCGTTC-CTTGATAACCTCTAGTTTGATA 17817 Query 20129 CGTGAGACTACTGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGGCAA-GAAGAA 20185 || || || || | || || | || | |||||| || | || || ||| Sbjct 17816 AAGGAAACCACATAAAATAAA--TCCGCTAATGAAAGTTACATATTCAGTTAAAGAGGAA 17759 Query 20186 GAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCT 20245 | || ||||| ||| |||| ||||||||||| ||||| || |||| ||||||||| Sbjct 17758 AAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAATA---- 17703 Query 20246 TCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATT 20305 | ||||||||| | |||| |||| || ||||| | ||| ||||| | ||||| ||| Sbjct 17702 TATTTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTATT 17643 Query 20306 TGGTT 20310 | ||| Sbjct 17642 TAGTT 17638 Score = 80.6 bits (88), Expect = 8e-11 Identities = 96/130 (74%), Gaps = 4/130 (3%) Strand=Plus/Minus Query 20181 AAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAAT 20240 || || | || ||||| || ||||| ||||||||||| ||||| || |||| ||| |||| Sbjct 44360 AAAAAAAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGAACTTTCAAT 44301 Query 20241 ACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAG 20300 | | ||||||||| | |||| |||| || ||||| | ||| ||||| ||||| Sbjct 44300 A----TATTTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTACGGTAG 44245 Query 20301 GGATTTGGTT 20310 |||| ||| Sbjct 44244 ATATTTAGTT 44235 >seq151 Length=113734 Score = 96.9 bits (106), Expect = 1e-15 Identities = 319/487 (66%), Gaps = 23/487 (5%) Strand=Plus/Minus Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 |||||| || |||||| |||||| | | ||| | ||| | |||||||||| ||| Sbjct 4859 TTACATAGGTGATGAGTGGCAACTTAATTTTTGACCGAGTATGTGTCCTTGGATTTTTGT 4800 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || || |||| |||||| | || | || ||||| | |||| || ||||| Sbjct 4799 TGCATATTCAGCTCGTGTTGCAACTGCAATTATTGT-TTTCTTGATCTATCCAATTGGTT 4741 Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009 |||| || || || || ||||||| | || | | |||| ||||||| ||| | | Sbjct 4740 AGGGAAGTTTTTCTTATAGTATGCCTCTAGGAAGTTTTGGTATTTTCAACTTTATGATTG 4681 Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTG 20069 ||||| | | | || ||||| || | ||||| || ||||| | || || Sbjct 4680 TATTCTAGACTAAGCACAACATCCTTGTACACCCATTTCACATATTAGGCGTA------- 4628 Query 20070 TATT-CGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-T 20127 ||| | | |||||| ||| ||||| |||| |||| || || | ||| | Sbjct 4627 -ATTACAACAACTTCTTATTCAATGCTATGCATCGTTC-CTTGATAACCTCTAGTTTGAT 4570 Query 20128 GCGTGAGACTACTGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAAG-- 20183 || || || || | || || | || | |||||| || | || || Sbjct 4569 AAAGGAAACCACATAAAATAAA--TCCGCTAATGAAAGTTACAGATTCAGTTAAAGAGGA 4512 Query 20184 AAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACG 20243 || | || ||||| ||| |||| ||||||||||| ||||| || |||| |||||||| Sbjct 4511 AAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCCAAT--- 4455 Query 20244 CTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGA 20303 | ||||||||| | |||| |||| || ||||| | ||| ||||| | ||||| | Sbjct 4454 -GTATTTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAGTAGGTA 4396 Query 20304 TTTGGTT 20310 ||| ||| Sbjct 4395 TTTAGTT 4389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148825231736502