Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq1998 181 3e-41 seq287 89.7 2e-13 >seq1998 Length=1172 Score = 181 bits (200), Expect = 3e-41 Identities = 289/410 (70%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| |||||||| ||||||| || | | | | || || Sbjct 408 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 349 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || ||||| || |||||||| || || || || || |||||||| || || || Sbjct 348 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGA 290 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| ||| || ||||||||||| || || || || ||| | | || | Sbjct 289 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 230 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | || || || || | || || |||||||| |||||||| || |||||||| Sbjct 229 TTCTGCG--GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAA 172 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||| | ||||| || || || | | || | || | |||||| | |||| || | Sbjct 171 TGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 112 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||||||||| || |||||||||||||| | || || || ||| | || |||||| | Sbjct 111 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCT 52 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTA 29066 || ||||| |||||||| || ||||| || |||| |||||| | |||| Sbjct 51 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTA 2 >seq287 Length=58314 Score = 89.7 bits (98), Expect = 2e-13 Identities = 164/239 (69%), Gaps = 16/239 (7%) Strand=Plus/Minus Query 28959 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGT 29018 ||||||||| || ||||||||||||| | ||||||| | ||| | || ||||||| ||| Sbjct 44655 TTACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGT 44596 Query 29019 CGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCA 29078 ||||| ||||||| || ||| | || | ||||||| | |||| ||| | ||| | Sbjct 44595 TGCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTA 44536 Query 29079 AGG------TTCTTTTAGCGACGCGATGCCTTTGGGTA--TTTCAGGCACCTTCAACTAC 29130 || |||| |||| ||||| | || | ||| | | ||||||| Sbjct 44535 GGGAAGCTTTTCTAATAGC------ATGCCCCTAGGAACCTTTAA--TATTTTCAACTTT 44484 Query 29131 ATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGT 29189 || | || ||| | || || || ||||| || |||||||| || ||||| | ||||| Sbjct 44483 ATAATTGTATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGT 44425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146662083600574