Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq1998 192 7e-44 seq14 150 2e-31 seq151 105 7e-18 seq287 98.7 1e-15 seq11 96.9 4e-15 seq10 95.1 1e-14 seq4 95.1 1e-14 seq5 87.8 2e-12 >seq1998 Length=1172 Score = 192 bits (212), Expect = 7e-44 Identities = 301/428 (70%), Gaps = 2/428 (0%) Strand=Plus/Minus Query 159959 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 160018 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 436 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 377 Query 160019 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 160077 |||||| || ||| | ||| | ||||| ||||| || || |||| ||| | ||||| | Sbjct 376 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCC 318 Query 160078 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 160137 | || || || || || || || |||||||| || |||| || || | ||||| |||| Sbjct 317 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 258 Query 160138 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 160197 | || || |||||||| || |||| |||| || || ||| | || || || || | Sbjct 257 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAA 198 Query 160198 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 160257 | |||||||| ||||| ||||||| ||| | || || || ||||||| | || | | Sbjct 197 TATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 138 Query 160258 TATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACC 160317 | | |||||| | | || | | || ||||| ||||||||||||||| | || Sbjct 137 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 78 Query 160318 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 160377 || | ||||||||||| ||||| ||| |||||||| ||||| || || || || ||| Sbjct 77 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 18 Query 160378 CTGTATTC 160385 |||| ||| Sbjct 17 CTGTTTTC 10 >seq14 Length=24855542 Score = 150 bits (166), Expect = 2e-31 Identities = 179/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 162366 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 162425 ||||| |||||||| |||||||| || |||||||| | || || ||||| || |||| Sbjct 952196 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTTGGGGTTGCT 952137 Query 162426 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGG 162485 ||||| | || | ||| | ||||| || ||||| ||||| || || | |||| ||||| Sbjct 952136 TTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACGGGTTTATGG 952077 Query 162486 ACATCCTCTATTGGCATTATT-GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAG 162544 | | || | || |||| | ||||| |||| || | ||||| || || ||||| Sbjct 952076 ATGAGCGCTCTCGG-ATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGACTTCGTTTC 952018 Query 162545 TCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCT 162604 |||| | ||| | ||||||||||||||||| ||||| || ||||||| ||| || ||||| Sbjct 952017 TCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAAAATATTCT 951958 >seq151 Length=113734 Score = 105 bits (116), Expect = 7e-18 Identities = 332/510 (65%), Gaps = 31/510 (6%) Strand=Plus/Minus Query 160324 GTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTAT 160383 ||||| | || ||||| | ||| |||||||| |||| || || | ||| | ||| | Sbjct 4821 GTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTGCAATTATTGTTT 4762 Query 160384 TCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTG 160443 || | | ||||| | ||| | || ||| || || ||||||||| || | | || Sbjct 4761 TCTTGATCTATCCAATTGGTTAGGGAAGTTTTTCTTATAGTATGCCTCTAGGAAGTTTTG 4702 Query 160444 GTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCC 160503 ||| ||| |||| ||| |||||||| | | | ||||| |||||| | || || || | Sbjct 4701 GTATTTTCAACTTTATGATTGTATTCTAGACTAAGCACAACATCCTTGTACACCCATTTC 4642 Query 160504 ACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCT-TTGTTCTCTGCTATGCACGGAAGT 160562 |||| | ||||| ||| | | || ||| ||||||||| Sbjct 4641 ACATATTAGGCGTA--------ATTACAACAACTTCTTATTCAATGCTATGCA------- 4597 Query 160563 CTCGTTACTTCCTCAC---TCGTTCGT-----GAAACGACTGAAACAGAGTCACAGAACT 160614 ||||| ||| | || | ||| | ||||| || ||| | || || Sbjct 4596 -TCGTTCCTTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCGCTAATG 4538 Query 160615 ACGGTTATAAGTTCGGTCAA-GAGGAAGAGACCT-ACAACATCGTCGCAGCCCATGGTTA 160672 | |||| | ||| || || |||||| | | || | || ||| | || || |||||||| Sbjct 4537 AAAGTTACAGATTCAGTTAAAGAGGAAAAAAACTTATAATATCATAGCTGCTCATGGTTA 4478 Query 160673 CTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTT 160732 || || || |||| |||||||| | || ||||||||||| | ||| | || || || Sbjct 4477 TTTTGGCCGATTGAACTTCCAATGT--AT--TTCAACAACTCTCATTCTTTACATTTTTT 4422 Query 160733 CCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGC 160792 ||| | || |||||| |||| || || | ||| ||| | | | | |||||| ||| | Sbjct 4421 CCTAGTTGCTTGGCCTATAGTAGGTATTTAGTTTACTATTTTCGATATTAGCATTATGTC 4362 Query 160793 ATTCAACCTCAACGGTTTCAACTTCAACCA 160822 || ||||| || | ||| || |||||||| Sbjct 4361 TTTTAACCTAAATGATTTTAATTTCAACCA 4332 >seq287 Length=58314 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 160633 AAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCC 160692 |||||||| | || || || ||| | || || |||||||| || || || |||| ||||| Sbjct 17766 AAGAGGAAAAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGAACTTCC 17707 Query 160693 AATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAG 160752 ||||| || ||||||||||| | ||| | || || ||||| | || |||||| ||| Sbjct 17706 AATAT--AT--TTCAACAACTCTCATTCTTTACATTTTTTCCTAGTTGCTTGGCCTATAG 17651 Query 160753 TCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCA 160812 | || || | ||| ||| | | | | |||||| ||| | || | ||| || | ||| Sbjct 17650 TAGGTATTTAGTTTACTATTTTAGATATTAGCATTATGTCTTTTAGCCTAAATGATTTTG 17591 Query 160813 ACTTCAACCA 160822 | |||||||| Sbjct 17590 ATTTCAACCA 17581 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 160287 TATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 160346 || ||||| ||||||||||||||| | || || ||||| | || ||||| | ||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 160347 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAA 160406 |||||||| |||| || || | || | || ||| | | ||||| | ||| | Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 160407 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 160466 || || || || ||||| || || | || | || ||| |||| || ||||| Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 160467 TTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTA 160526 ||| | || || ||||| ||||||||||| || || ||||| | ||||| ||| ||| Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGTA 44415 Query 160527 T 160527 | Sbjct 44414 T 44414 >seq11 Length=27369018 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 161125 GTACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGG 161184 |||||| ||||||| || || | ||||||||||| | ||| ||||| | ||||| Sbjct 27029555 GTACATCCTAGATGCGGCTGAGAATGCAGGAGTTGAGCTACCCTACTCTTGCAGGGCTGG 27029614 Query 161185 TGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTC 161244 ||||||||| | ||||| || || || | ||||| |||| || || ||||| || Sbjct 27029615 AGCTTGCTCTACTTGTGCTGGGAAGATGGTGTCAGGCTCAGTTGATCAATCTGATGGTTC 27029674 Query 161245 CTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTAC 161304 |||| ||||||| | || || || || | || |||| |||||| | || || || Sbjct 27029675 CTTCCTGGATGAGAATCAAATGGAGGGGGGTTATCTGCTGACTTGTGTTTCTTACCCAAC 27029734 Query 161305 TAGCGATTGTGTGATTCAAAC 161325 | |||||||| ||||| || Sbjct 27029735 TTCAGATTGTGTTATTCACAC 27029755 >seq10 Length=26335333 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 || ||| | || ||| ||||| || || ||||| | || || || | || ||| Sbjct 23499978 TATATTCTTGACGCATTTGAAGAAGCTGGTATTGATCTGCCATACTCATGCAGGGCAGGT 23500037 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 ||||||||||||||||||| |||||| | ||| || ||||||||||||| | | Sbjct 23500038 TCTTGCTCTTCCTGTGCAGGGAAAATTGTAGGAGGAACTCTAGACCAGTCTGATGGGAGC 23500097 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 ||| | || ||||||||||| ||| |||| | || | || |||||||| || ||| Sbjct 23500098 TTCCTTGAAGATGACCAGATGGAAGCTGGCTGGGTTCTCACTTGTGTTGCTTACCCTCAG 23500157 Query 161306 AGCGATTGTGTGATT 161320 |||||||| ||| Sbjct 23500158 TCTGATTGTGTCATT 23500172 >seq4 Length=28735499 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/204 (73%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 161126 TACATTTTAGATGCAGCAGAAGAG-GCAGGAGTTGATATTAACTATTCTTGTCGTGCTGG 161184 |||||| |||||||||| || ||| || |||||||| | |||||||| | || || Sbjct 464493 TACATTCTAGATGCAGCCGA-GAGTGCTGGAGTTGAGCTGCCATATTCTTGCAGGGCAGG 464435 Query 161185 TGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTC 161244 ||||||||| | ||||| || || || | || || |||| ||||||||||| || Sbjct 464434 GGCTTGCTCTACGTGTGCTGGGAAGATGGTGTCGGGCTCAGTCGACCAGTCTGATGGTTC 464375 Query 161245 CTTCTTGGATGATGAC-CAGATTGAATCTGGATT-CCTTTTGACATGTGTTGCATATCCT 161302 |||| ||||||| ||| |||| ||| || || || |||| || || | || || Sbjct 464374 CTTCCTGGATGA-GACTCAGA-TGAGCGAGGGTTATCTGCTGACTTGCGTATCGTACCCG 464317 Query 161303 ACTAGCGATTGTGTGATTCAAACT 161326 ||| |||||||||||||| ||| Sbjct 464316 ACTTCAGATTGTGTGATTCACACT 464293 >seq5 Length=28438989 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 160684 TGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCAC--TTCTTCCTGGCAGC 160741 |||||||||||||||| ||||||||||| | ||| ||||| |||||||| || || Sbjct 7261847 TGATCTTCCAATATGCCAGTTTCAACAACTCTCTTTC--TTCACATTTCTTCCTAGCTGC 7261790 Query 160742 ATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCT 160801 ||||||||||| || |||||||||||| | |||||| | |||| ||||| Sbjct 7261789 CTGGCCTGTAGTAGGTCATTGGTTCACTGCTTCATATATTAGCATTACGGCACCCAACCA 7261730 Query 160802 CAACGGTTTCAACTTCAACCA 160822 || | ||| | |||||||| Sbjct 7261729 AAATTGCTTCGATTTCAACCA 7261709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559489879517800