Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq1998 199 5e-46 seq14 132 6e-26 seq11 95.1 1e-14 seq287 93.3 5e-14 >seq1998 Length=1172 Score = 199 bits (220), Expect = 5e-46 Identities = 308/437 (70%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 180980 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 181039 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 436 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 377 Query 181040 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 181098 |||||| || ||| | ||| | |||||| ||||| || || |||| ||| | ||||| | Sbjct 376 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCC 318 Query 181099 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 181158 | || || || || || || || |||||||| || |||| || || | ||||| |||| Sbjct 317 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 258 Query 181159 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 181218 | || || |||||||| || |||| |||| || || ||| | || || || || | Sbjct 257 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAA 198 Query 181219 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 181278 | |||||||| ||||| ||||||| ||| | || || || ||||||| | || | | Sbjct 197 TATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 138 Query 181279 TCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACC 181338 | | |||||| | | || | | |||||||| ||||| |||||||| || || Sbjct 137 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 78 Query 181339 GCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTG 181398 | | ||||||||||| ||||| ||||||||| || ||||| || ||||| || ||| Sbjct 77 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 18 Query 181399 CTGTATTCCTAGTCTAT 181415 |||| ||| | ||||| Sbjct 17 CTGTTTTCTTGATCTAT 1 >seq14 Length=24855542 Score = 132 bits (146), Expect = 6e-26 Identities = 178/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 183030 ACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTC 183089 ||||| | || || || ||||| ||||| || || || || |||| || |||||||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 183090 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183149 |||||||| ||| | |||| | |||||| || ||||||||||| ||||| || || | | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 183150 GGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGAT 183209 ||| | ||| | || | || | | || || |||| ||| | ||||| ||||| Sbjct 952085 GGTTTATGGATGAGCGCTCTCGGATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGAC 952026 Query 183210 TTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAG 183269 || || ||| | || | ||||||||||||||||| || ||||| ||||||| || Sbjct 952025 TTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAA 951966 Query 183270 AACATCCT 183277 || || || Sbjct 951965 AATATTCT 951958 >seq11 Length=27369018 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 179470 GATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGT 179529 |||||| ||| ||||| || || ||||| | ||||| || || | |||||||| Sbjct 27029547 GATGATACGTACATCCTAGATGCGGCTGAGAATGCAGGAGTTGAGCTACCCTACTCTTGC 27029606 Query 179530 CGTGCTGGTGCTTGTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGATCAAAGC 179589 | ||||| ||||| || |||||||||| || | | | || || ||||||||| Sbjct 27029607 AGGGCTGGAGCTTGCTCTACTTGTGCTGGGAAGATGGTGTCAGGCTCAGTTGATCAATCT 27029666 Query 179590 GATCAATCGTTTTTGGATGACGATCAAATGGAGTCGGGATTTATTCTGACTTGCGTATCT 179649 ||| || || ||||||| ||||||||||| ||| | | | |||||||| || ||| Sbjct 27029667 GATGGTTCCTTCCTGGATGAGAATCAAATGGAGGGGGGTTATCTGCTGACTTGTGTTTCT 27029726 Query 179650 TATCCTACTAGTGATTGCGT 179669 || || ||| ||||| || Sbjct 27029727 TACCCAACTTCAGATTGTGT 27029746 >seq287 Length=58314 Score = 93.3 bits (102), Expect = 5e-14 Identities = 167/244 (68%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 181308 TACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTT 181367 |||||||| ||||| |||||||| || || || ||||| | || ||||| | |||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 181368 GCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAA 181427 ||||| || |||| || ||| | || | || ||| | ||||||| | ||| | Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 181428 GGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 181487 || || ||| | ||||| || || | || | || ||||||| || |||| Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 181488 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTA 181547 ||| | || ||||||||||| || ||||| || || ||||| || || || |||||| Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGTA 44415 Query 181548 TTTG 181551 | || Sbjct 44414 TATG 44411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614602088588320