Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1998 230 3e-55 seq14 125 1e-23 >seq1998 Length=1172 Score = 230 bits (254), Expect = 3e-55 Identities = 298/409 (73%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || ||||||||| | || ||||| |||||| | ||||| ||||| || || |||||||| Sbjct 408 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 349 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || |||||||||||| | | ||| || || || || || || || || ||||| Sbjct 348 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGA 290 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 ||| || |||| || || | ||||||||||| || || |||||||| || |||||| Sbjct 289 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 230 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 ||| || || ||| | || || |||||||| |||||||| || | | || ||||| Sbjct 229 TTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAATG 170 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 | | ||||| || ||||||| | ||| |||| | |||||| | ||||| | Sbjct 169 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 110 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853 || ||||| |||||||||||||| || ||| | |||||| | |||||||| ||| Sbjct 109 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 50 Query 174854 AGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTAT 174902 ||||| || || || |||||||| ||| | || || ||| | ||||| Sbjct 49 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTAT 1 >seq14 Length=24855542 Score = 125 bits (138), Expect = 1e-23 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 176529 GAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCG 176588 ||||| || ||||| ||||| || || |||||||| | || |||||||| |||||||| Sbjct 952196 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTTGGGGTTGCT 952137 Query 176589 TTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGG 176648 ||| |||| | |||| | || ||||||||||| ||||| || || | |||| | ||| Sbjct 952136 TTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACGGGTTTATGG 952077 Query 176649 GTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGC 176708 | | | || | | || || |||| ||| | ||||| ||||| || || Sbjct 952076 ATGAGCGCTCTCGGATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGACTTCGTTTCT 952017 Query 176709 CAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCT 176767 || | || | ||||||||||||||||| ||||| |||||||||| || || || || Sbjct 952016 CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAAAATATTCT 951958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729911178401720