Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq1998 208 9e-49 seq14 147 3e-30 seq287 96.9 4e-15 seq11 95.1 1e-14 >seq1998 Length=1172 Score = 208 bits (230), Expect = 9e-49 Identities = 293/409 (72%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 177876 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177935 ||||| || || | || ||||| || || ||||||| || ||| | ||| | |||||| Sbjct 408 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 349 Query 177936 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 177994 ||||| || || |||| ||| | ||||| || || || || || || || || ||||| Sbjct 348 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGA 290 Query 177995 ACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATC 178054 ||| || |||| || || | ||||| ||||| || || |||||||| || |||| | Sbjct 289 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 230 Query 178055 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 178114 ||| || || ||| | || || || || || |||||||| ||||| ||||||| || Sbjct 229 TTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAATG 170 Query 178115 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGC 178174 | | || || || ||||||| | || | || | |||||| | ||||| | | Sbjct 169 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 110 Query 178175 ATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGT 178234 |||||||| ||||||||||||||| | |||| | ||||||||||| ||||| ||| Sbjct 109 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 50 Query 178235 AGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTAT 178283 ||||| || ||||| || ||||| || | || || ||| || ||||| Sbjct 49 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTAT 1 >seq14 Length=24855542 Score = 147 bits (162), Expect = 3e-30 Identities = 178/240 (74%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 179901 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCA 179960 ||||| |||||||| |||||||| || |||||||| | || || ||||| || |||| Sbjct 952196 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTTGGGGTTGCT 952137 Query 179961 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGG 180020 ||||| | || | ||| | ||||| || ||||| ||||| || || | |||| ||||| Sbjct 952136 TTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACGGGTTTATGG 952077 Query 180021 ACATCCTCTATTGGCATTATT-GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAG 180079 | | || | || |||| | ||||| |||| || | ||||| || || ||||| Sbjct 952076 ATGAGCGCTCTCGG-ATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGACTTCGTTTC 952018 Query 180080 TCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCT 180139 |||| | ||| | |||||||||||||| || |||||||| ||||||| || || ||||| Sbjct 952017 TCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAAAATATTCT 951958 >seq287 Length=58314 Score = 96.9 bits (106), Expect = 4e-15 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 178176 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 178235 |||||||| ||||||||||||||| | || || ||||| | || ||||| | ||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 178236 GCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAA 178295 ||||| || |||| || ||| | || || ||| || ||||||| | ||| | Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 178296 GGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 178355 || |||||| | ||||| || || | || | || ||||||| || |||| Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 178356 TTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTA 178415 ||| | || || |||||||| || |||||||| || ||||| || || || |||||| Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGTGTA 44415 Query 178416 T 178416 | Sbjct 44414 T 44414 >seq11 Length=27369018 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 176337 GATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGT 176396 |||||| ||| ||||| || || ||||| | ||||| || || | |||||||| Sbjct 27029547 GATGATACGTACATCCTAGATGCGGCTGAGAATGCAGGAGTTGAGCTACCCTACTCTTGC 27029606 Query 176397 CGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGT 176456 | ||||| ||||| || |||||||||| || | | | || || |||||||| | Sbjct 27029607 AGGGCTGGAGCTTGCTCTACTTGTGCTGGGAAGATGGTGTCAGGCTCAGTTGATCAATCT 27029666 Query 176457 GATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCT 176516 ||| || ||||||||||| ||||||| || |||| | | |||||||| || ||| Sbjct 27029667 GATGGTTCCTTCCTGGATGAGAATCAAATGGAGGGGGGTTATCTGCTGACTTGTGTTTCT 27029726 Query 176517 TATCCTACTAGTGATTGCGT 176536 || || ||| ||||| || Sbjct 27029727 TACCCAACTTCAGATTGTGT 27029746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605994305832720