Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq1998 178 1e-39 seq14 132 5e-26 seq287 95.1 1e-14 >seq1998 Length=1172 Score = 178 bits (196), Expect = 1e-39 Identities = 303/437 (69%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 158378 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 158437 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 436 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 377 Query 158438 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 158496 |||||| || ||| | ||| | ||||| ||||| || || |||| ||| | ||||| | Sbjct 376 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCC 318 Query 158497 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 158556 | || || || || || || || |||||||| || |||| || || | ||||| |||| Sbjct 317 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 258 Query 158557 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 158616 | || || |||||||| || | || |||| || || ||| | || || || || | Sbjct 257 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAA 198 Query 158617 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 158676 | |||||||| ||||| ||||||| ||| | || || || ||||||| | || | | Sbjct 197 TATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 138 Query 158677 TCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACC 158736 | | |||||| | | || | | || ||||| ||||| ||||||||| | || Sbjct 137 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 78 Query 158737 GCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTG 158796 | | ||||||||||| ||||| ||| |||||||| || || || || || || ||| Sbjct 77 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 18 Query 158797 CTGTATTCCTCGTCTAT 158813 |||| ||| | ||||| Sbjct 17 CTGTTTTCTTGATCTAT 1 >seq14 Length=24855542 Score = 132 bits (146), Expect = 5e-26 Identities = 175/240 (73%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 160577 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 160636 ||||| |||||||| |||||||| || |||||||| | || || ||||| || |||| Sbjct 952196 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTTGGGGTTGCT 952137 Query 160637 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGG 160696 ||||| | || | ||| | ||||| || ||||| ||||| || || | |||| | ||| Sbjct 952136 TTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACGGGTTTATGG 952077 Query 160697 ACATCCAGTATTGGCATTATT-GGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAG 160755 | | | | || |||| | ||||| |||| ||| | ||||| || || ||||| Sbjct 952076 ATGAGCGCTCTCGG-ATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGACTTCGTTTC 952018 Query 160756 TCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCT 160815 ||| | || | |||||||||||||| ||||||||||| ||||||| || || || || Sbjct 952017 TCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAAAATATTCT 951958 >seq287 Length=58314 Score = 95.1 bits (104), Expect = 1e-14 Identities = 295/455 (65%), Gaps = 30/455 (7%) Strand=Plus/Minus Query 158743 GTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTAT 158802 ||||| | || ||||| | ||| |||||||| || | || || | | | ||| | Sbjct 18069 GTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTACTATTATTGTTT 18010 Query 158803 TCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTG 158862 || | ||||||| | || | || | ||| || || ||||||||| || | || || Sbjct 18009 TCTTGATCTATCCAATTGGCTAGGGATGTTTTTCTTATAGTATGCCTCTAGGAAGCTTTG 17950 Query 158863 GTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCC 158922 || ||| |||| | | |||||||| | | || |||||||||||||| ||||| || | Sbjct 17949 ATATTTTCAACTTTAGGATTGTATTCTAGACTGAGCACAACATCCTTATACACCCATTTC 17890 Query 158923 ATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTT-TTCTCTGCTATGCATGGAAGT 158981 | || || || ||| | |||| ||| |||||||||| Sbjct 17889 ACATATCAGGCGTA--------ATTACACCAACTTCTTATTCAGTGCTATGCAT------ 17844 Query 158982 CTCGTTACTTCCTCAC---TCGTTCGT-----GAAACGACTGAAACAGAGTCACAGAACT 159033 |||| ||| | || | ||| | ||||| || ||| | || || Sbjct 17843 --CGTTCCTTGATAACCTCTAGTTTGATAAAGGAAACCACATAAAATAAATCCGCTAATG 17786 Query 159034 ATGGTTACAAGTTCGGACAA-GAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTAC 159092 | |||||| ||| | || || ||| |||| ||||||||| | || || |||||||| Sbjct 17785 AAAGTTACATATTCAGTTAAAGAGGAAAAAACTTATAATATCATAGCTGCTCATGGTTAT 17726 Query 159093 TTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTC 159152 || || || |||| ||||||||| | ||||||||||| | ||| || || || ||| Sbjct 17725 TTTGGCCGATTGAACTTCCAATA----TATTTCAACAACTCTCATTCTTTACATTTTTTC 17670 Query 159153 CTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCAC 159187 || | ||| |||||| | || || || | ||| || Sbjct 17669 CTAGTTGCTTGGCCTATAGTAGGTATTTAGTTTAC 17635 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 158706 TATATGGGACGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTA 158765 || ||||| ||||| ||||||||| | || || ||||| | || ||||| | ||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 158766 GCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158825 |||||||| || | || || | || | || ||| | ||||||| | ||| | Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 158826 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158885 || || || || ||||| || || | || | || ||| |||| || ||||| Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 158886 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATAT 158926 ||| | || || |||||||||||||||||||| || || || Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 44434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552459656947520