Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq1998 212 8e-50 seq14 136 5e-27 seq287 114 2e-20 seq151 91.5 2e-13 seq560 84.2 3e-11 seq7 82.4 9e-11 >seq1998 Length=1172 Score = 212 bits (234), Expect = 8e-50 Identities = 310/436 (71%), Gaps = 2/436 (0%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 ||||| | ||| |||| ||| | || ||| | || |||| ||||| ||||| || Sbjct 435 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 376 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| ||||| || || | |||||| | || || || Sbjct 375 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCC 317 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || |||||||| || |||| || || | ||||||||||| Sbjct 316 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 257 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 || || |||||||| || | || | ||| || || ||| | || || ||||| || Sbjct 256 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 197 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| ||||| | ||||| ||| | || || || ||||||| | || | || Sbjct 196 ATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 137 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | |||||| | | || | | || ||||| ||||||||||||||| || ||| Sbjct 136 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 77 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 ||| |||||||| || ||||| ||||||||| || || || || || ||||| | ||| Sbjct 76 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 17 Query 179280 AGTATTCCTCGTCTAT 179295 || ||| | ||||| Sbjct 16 TGTTTTCTTGATCTAT 1 >seq14 Length=24855542 Score = 136 bits (150), Expect = 5e-27 Identities = 183/252 (73%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 180690 ACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 180749 || |||| || |||||||| || |||||||| || |||||||| | || || ||||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 180750 GGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 180809 || |||| ||||| | || | ||| | ||||| || ||||| ||||| || || | | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 180810 GGTCTATGGACATCCTCTATTGGCATTATT-GGTCTTGCTCTCAACCTTCGTGCTTACGA 180868 ||| |||||| | || | || |||| | ||||| |||| || | ||||| || || Sbjct 952085 GGTTTATGGATGAGCGCTCTCGG-ATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGA 952027 Query 180869 TTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAA 180928 ||||| ||| | ||| | ||||||||||||||||| || ||||| ||||||| || Sbjct 952026 CTTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAA 951967 Query 180929 GAACATCCTATT 180940 || || || || Sbjct 951966 AAATATTCTCTT 951955 >seq287 Length=58314 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 179188 TATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTT 179247 || ||||| ||||||||||||||| || || ||| ||||| |||| ||||| | |||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGTT 44595 Query 179248 GCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAA 179307 ||||| || || | || || |||| | | || ||| | ||||||| | ||| | Sbjct 44594 GCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTAG 44535 Query 179308 GGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 179367 || || ||| || ||||| || || | || | || ||| |||| || ||||| Sbjct 44534 GGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGTA 44475 Query 179368 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATAT 179408 ||| | || || |||||||||||||||||||| || || || Sbjct 44474 TTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 44434 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 179198 GTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTG 179257 |||||||| ||||| || | || ||||| |||| ||||| | ||||||||| || | Sbjct 18096 GTGAGTGGCAACTTAATTTTTGACTGAGTATGTGTCCTTGGATTTTTGTTGCATATTCAG 18037 Query 179258 CACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCT 179317 | | || || || | | | || ||| | ||||||| | || | || | ||| | Sbjct 18036 CTCGTGTTGCAACTACTATTATTGTTTTCTTGATCTATCCAATTGGCTAGGGATGTTTTT 17977 Query 179318 CTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAG 179377 || || ||||||||| || | || || || ||| |||| | | |||||||| | | | Sbjct 17976 CTTATAGTATGCCTCTAGGAAGCTTTGATATTTTCAACTTTAGGATTGTATTCTAGACTG 17917 Query 179378 AACACAACATCCTTATGCACCCGTTCCATAT 179408 | |||||||||||||| ||||| || || || Sbjct 17916 AGCACAACATCCTTATACACCCATTTCACAT 17886 >seq151 Length=113734 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 179199 TGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGC 179258 ||||||| ||||| || | | ||||| |||| ||||| | ||||||||| || || Sbjct 4847 TGAGTGGCAACTTAATTTTTGACCGAGTATGTGTCCTTGGATTTTTGTTGCATATTCAGC 4788 Query 179259 ACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTC 179318 | || || |||| | | || ||| | ||||||| | ||| | || ||| || Sbjct 4787 TCGTGTTGCAACTGCAATTATTGTTTTCTTGATCTATCCAATTGGTTAGGGAAGTTTTTC 4728 Query 179319 TGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGA 179378 | || ||||||||| || | | ||||| ||| |||| ||| |||||||| | | | Sbjct 4727 TTATAGTATGCCTCTAGGAAGTTTTGGTATTTTCAACTTTATGATTGTATTCTAGACTAA 4668 Query 179379 ACACAACATCCTTATGCACCCGTTCCATAT 179408 |||||||||||| | ||||| || || || Sbjct 4667 GCACAACATCCTTGTACACCCATTTCACAT 4638 >seq560 Length=20368 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 179260 CCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 179319 || || || ||||| | ||| | ||| | ||||||| | ||||| || || ||| Sbjct 20253 CCTGTTGCAGCTGCTACTGCTCTTTTCTTGATCTATCCAATTGGTCAGGGAAGCTTTTCT 20312 Query 179320 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGC 179375 |||| ||||||||| || |||||||||||||| |||| ||| |||||||||| || Sbjct 20313 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGC 20368 >seq7 Length=27069033 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 177390 TACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTACTCATGCCGCGCTGGT 177449 || ||||||||||| ||||||||| ||||||||| || ||||||||| | |||||| Sbjct 1887721 TATATCCTCGACGCTTTTGAAGAAGCTGGTGTTGATCTTCCATACTCATGCAGGGCTGGT 1887780 Query 177450 GCTTGTTCATCCTGTGCTGGTAAACTTG 177477 |||| || || |||||||| ||| ||| Sbjct 1887781 TCTTGCTCTTCTTGTGCTGGGAAAATTG 1887808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610314196806720