Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq17 197 2e-45 seq2 127 3e-24 seq12 113 6e-20 >seq17 Length=27373735 Score = 197 bits (218), Expect = 2e-45 Identities = 409/602 (68%), Gaps = 10/602 (2%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 || || ||||| || || || | ||| ||||||| | || || ||||| |||||||| Sbjct 24447975 AAACACGCGAAATCGCAGTGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGTT 24448034 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAA 39732 | ||||||||| || || ||||| || ||||||||||| || ||| ||| |||||| || Sbjct 24448035 AATCCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGC-GCAGAAGCTTCCAGAGAA 24448093 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC---ATT 39789 || || || || || ||||| || | || ||||| || || || || | Sbjct 24448094 AAATATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAA---GTCTCCGAACC 24448150 Query 39790 ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 || |||||| | | ||||| ||||| || || |||||||| | || || || || Sbjct 24448151 ATCAATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGGC 24448210 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 || ||| | | || || |||| ||||| | ||| || || | || ||||| || Sbjct 24448211 ATGAAACAAACGATTCTTCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGTA 24448270 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 ||| || || || || || ||||| || || || ||||| |||||| | || |||| Sbjct 24448271 CATCTCAGAGTGAATATTCTCAATAGCGATTTGGAATCCATAAAAAGCACGAGCCTCAGC 24448330 Query 39970 AATTTGTACCT-CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || || | || | |||| | | || | ||||||| ||||| |||||| | Sbjct 24448331 TACCTGAACTTCCTTCATAAAA-CGGCCAGCGAGATTTTCAAGAACTATACCATCAGAGG 24448389 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 | ||||| || || | ||||| | ||||| | || ||||||| || | | | || Sbjct 24448390 CAGCAAAGAAGGCAAGAACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCC 24448449 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 | | || ||||| || | ||| || || || || |||||||| || ||||| || | Sbjct 24448450 AATGGCGGAGATCTTGAGAGAGATCGACCTCCTCGGCAGTCCAAAAGGATGCCTCGGCTT 24448509 Query 40149 TTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGAT 40208 | |||||||| | |||||| | ||||||| ||||| || ||| || | || ||| | Sbjct 24448510 TCTTGTACATCTCCCATATTTGTGGATATTGAATTGGGAACATACAGAAACGATCTGGGT 24448569 Query 40209 TT 40210 || Sbjct 24448570 TT 24448571 >seq2 Length=32417782 Score = 127 bits (140), Expect = 3e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||||| |||| | |||| ||||| |||| || || Sbjct 14720524 TCCTCCTTGATCAACATAGCGAGCAGTGTCATTAAACACTCGAAGCATAGGAACAAGGCC 14720465 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | |||||||| || ||| ||||| ||| |||| || |||||| | ||| Sbjct 14720464 ATTGGAACTCCCATTTGTCCCCCGAATGTAACTGCCTGTTGCACGGATATTATGCACAGA 14720405 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 ||||| |||||||| || | || || | |||||| ||||| || ||| |||| Sbjct 14720404 AAGACCAATTCCTCCAGCTACCTTGCTTATAACAGCACACTCCTTCAAAGTATCAAATAT 14720345 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| |||||||||||| ||||| |||||| |||||| Sbjct 14720344 GCCCTCAATGCTATCATCTTTCATGCACGCAAGAAAGCAGCTA 14720302 >seq12 Length=31596830 Score = 113 bits (124), Expect = 6e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | |||||| | ||| | || | | ||| |||||||| || Sbjct 29957321 TCCTCCTTGATCAACATACCGGGCAGTATCATTGAACACACGTAACATGGGAATAATGCC 29957380 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | |||||||||||| ||| || || || | || |||||||| || ||| Sbjct 29957381 ATTAGACGTCCCATTTGTTCCACGAATGTAGCTACCAGTAGCACGAATATTGTGAACAGA 29957440 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| ||| | |||||| |||| || |||||||| Sbjct 29957441 GACACCAATTCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATAT 29957500 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 || || || ||||||||| ||||| Sbjct 29957501 GCCTTCAATACTATCATCTTTCATG 29957525 Score = 89.7 bits (98), Expect = 7e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | || ||||| || ||||||||||| | ||| | || || | Sbjct 29957735 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCAACGCTGAGACATCAAATGG 29957794 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| ||| |||| || ||||| || |||||||| | || || | ||||| | Sbjct 29957795 TAGGTTTTGATAACTGAATCAATATCATCCTTGTGAATTCCAACAGCTACCCTCATCAGC 29957854 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || |||||||| | ||||| ||| | | ||| || || || || ||||||| Sbjct 29957855 ATGTGCTGAGGCCTCTCTACAACTTTCCCTTGCACTTTTAAGAGATAGGACCTTTCCAGG 29957914 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 || || || ||||| || | || |||||| | || ||||| || Sbjct 29957915 GTCTTGAAGCCAAAGTAATCATAGTCAAAGTCACGATCATAAATTAT 29957961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686891464139160