Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq17 237 1e-57 >seq17 Length=27373735 Score = 237 bits (262), Expect = 1e-57 Identities = 408/586 (70%), Gaps = 10/586 (2%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||||||||||| | |||||| | |||||||| ||||| |||| || |||| Sbjct 24448551 TGTTCCCAATTCAATATCCACAAATATGGGAGATGTACAAGAAAGCCGAGGCATCCTTTT 24448492 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAGCACATTGGATTGCATTAAAACCA 43825 |||| || || || || ||| | || |||| || || |||||| | ||| | Sbjct 24448491 GGACTGCCGAGGAGGTCGATCTCTCTCAAGATCTCCGC-CATTGGGAAACCCTAACTTCC 24448433 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 | || || || ||||| | ||| | || || |||||||| || || ||||| Sbjct 24448432 GATGAGAAGCACTTTATCACCCATGTTCTTGCCTTCTTTGCTGCCTCTGATGGTATAGTT 24448373 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 ||||||| | | | | || ||| | | |||||||| || | || || || |||| Sbjct 24448372 CTTGAAAATCTCGCTGGCCGTTTTATGAAGGAAGTTCAGGTAGCTGAGGCTCGTGCTTTT 24448313 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 ||||| || ||||| || || || |||||||| || || |||||||||||| || | || Sbjct 24448312 TATGGATTCCAAATCGCTATTGAGAATATTCACTCTGAGATGTACAGTCTTTTGTTGGAG 24448253 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC- 44064 || || |||||||| | |||||| |||| |||||| |||| || || || || || Sbjct 24448252 ACTTATATCAAAGACTCCAATGAGAAGAATCGTTTGTTTCATGCCATCGATACCGTTCCT 24448193 Query 44065 --TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTT 44122 || | |||| || || || ||||| || | ||||| || || |||| Sbjct 24448192 TGTGTGGCTAAA---AAGGCTGAGTGGGCTCTCAGGTGGATTGATGGTTCGGAGACTTTC 24448136 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGC 44181 | || | || |||| ||||| |||||| || || || || || || | | | ||| Sbjct 24448135 GCTGAGAGGCTGATCGCTTTTGCCTGTGTGGAGGGGATATTTTTCTCTGGAAGCTTCTGC 24448076 Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 || ||||||||| ||||||| || || | |||||||| || || |||||||| ||||| Sbjct 24448075 -GCAATATTTTGGCTAAAGAAGCGGGGACTCATGCCTGGATTAACATTTTCAAACGAGTT 24448017 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTA 44287 || ||| ||||||||||| || |||||||| || || ||| || Sbjct 24448016 GATCTCTCGAGATGAAGGCTTGCACTGCGATTTCGCGTGTTTGCTA 24447971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446219974095