Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 118 9e-22 seq11 93.3 4e-14 seq7 84.2 2e-11 seq16 82.4 6e-11 >seq1 Length=34959721 Score = 118 bits (130), Expect = 9e-22 Identities = 168/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 27015 TTATTGCCTCCGCGC---AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTG 27071 || ||| |||||| | || ||||| |||| ||| | || || || || ||||| ||| Sbjct 31554275 TTCTTGGCTCCGCCCCTCAAGCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTG 31554334 Query 27072 TAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGA 27131 |||||| | | | || ||||||| || ||||| || ||| | ||||| ||||| || Sbjct 31554335 TAGTCGGCAAGGGTCCGGCCGTCTTCTAGTTGTTTTCCAGCGAAGATGAGGCGCTGCTGG 31554394 Query 27132 TCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTG 27191 ||||| || | ||||| || || ||||||| |||| | || | |||||| | Sbjct 31554395 TCCGGTGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATAGTGTCCGAA 31554454 Query 27192 GCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || ||||||||||| | || ||||| || ||||| || ||||| ||||| Sbjct 31554455 GACTCTACCTCTAGAGTTATGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 31554510 >seq11 Length=27369018 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | |||||||| | || || || ||||||||||||||||| Sbjct 5723224 TGCCTCCACGAAGGCGGAGCACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAG 5723165 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | || || ||||| ||||| || | || || | ||| || || || | Sbjct 5723164 CAAGGGTGCGGCCATCCTCTAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTG 5723105 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| ||||| || |||||| || | | || | ||||||| ||| | Sbjct 5723104 GAATACCTTCTTTGTCCTGGATCTTAGCCTTTACATTGTCAATGGTGTCTGAACTTTCCA 5723045 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | ||| || | ||||| || |||||||| |||||||| ||||| Sbjct 5723044 CCTCCAAAGTGATTGTCTTGCCGGTGAGAGTTTTTACAAAGATCTGCAT 5722996 >seq7 Length=27069033 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| | ||| || | |||| ||| | ||||| ||||| |||||||||||||| ||| Sbjct 1829303 CCTCCCCTCAATCGGAGAACCAGATGCAGAGTAGATTCTTTCTGAATATTGTAGTCAGCT 1829362 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | | | || || | || || ||||| | || || | ||| || || || || Sbjct 1829363 -AAGGTCCTTCCATCCTCCAATTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGG 1829421 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || ||||| ||||||| || | | | || | ||||| | | || || Sbjct 1829422 AATCCCTTCCTTATCTTGGATCTTGGCCTTAACGTTGTCAATTGTGTCAGAGCTCTCGAC 1829481 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||| | ||||| || ||||| || |||||||| ||||| Sbjct 1829482 CTCAAGAGTTATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 1829529 >seq16 Length=28979753 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| |||||||||||||| || || || |||| ||||||||||||| || ||| Sbjct 1160225 GTAGACTCTTTTTGAATATTATAATCAGCCAAAGTGCGACCGTCTTCGAGCTGCTTTCCG 1160284 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || | || || || || || | || || || || ||||| || Sbjct 1160285 GCGAAGATAAGCCTTTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGAATCTTAGCCTTG 1160344 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| || || || || || || |||| ||||| |||| ||| Sbjct 1160345 ACGTTGTCAATGGTGTCGCTGCTCTCCACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTT 1160404 Query 27231 TTCACAAAGATTTGCATA 27248 ||||| ||||| |||||| Sbjct 1160405 TTCACGAAGATCTGCATA 1160422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424923943825128