Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 154 2e-32 seq17 96.9 4e-15 seq5 84.2 3e-11 >seq2 Length=32417782 Score = 154 bits (170), Expect = 2e-32 Identities = 287/420 (68%), Gaps = 6/420 (1%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 ||| ||||| || | | |||||| || ||||| || | || ||||| | | ||||| Sbjct 6732400 ATCTAGGATGTCTGCCCTATTAGTTGCTGCAATGACAATGATACCAGTGTTACCCTCAAA 6732459 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || | | || |||| || |||||||| ||||||||| || Sbjct 6732460 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCC--- 6732516 Query 11602 ACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 |||| |||| | | |||| | || || |||||||| ||||| | || ||||| || Sbjct 6732517 ACCAATGCCAGTGCCTCTTTGCCTTCCAACAGCATCAATTTCATCTACAAATACAATGCA 6732576 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || |||||| ||| ||| |||||||| || || || |||||| |||||||| Sbjct 6732577 AGGAGCATTTTCTTTGGCCTTTTTGAAGAGATCACGGACTCTAGAGGCACCAACACCAAC 6732636 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778 ||||||||| ||||| | | |||| || ||||| ||| | |||||| || Sbjct 6732637 AAACATCTCAACAAACTCAGAACCAGATATGGAGAAAAATGGAACACCAGCTTCACCGGC 6732696 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 ||||| ||| || || |||||||| || ||||| ||| | |||||| | ||| Sbjct 6732697 AATGGCCTTGGCTAGAAGAGTCTTTCCGGTTCCTGGAGGACCAACAAGAAGGACACCTTT 6732756 Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || || ||| | || ||||||| || | ||||||||| || |||| ||| Sbjct 6732757 TGGAATGCGAGCCCCAACTGCAGTGAATCTCTCTGGCTTCTTGAGAAACTCAACAACCTC 6732816 Score = 109 bits (120), Expect = 7e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 111950 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTG 112009 || || ||||||||||| || || || ||||| || |||||| | || |||||| | Sbjct 14720165 GGGGTTCCAGCATTGAAAAGAGTAGGGGTTGCATGTATGAACCAGCGCTGAGACATCAAG 14720106 Query 112010 TCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATG 112069 | |||||| | | |||| |||||||| || ||| || |||| || |||| ||| Sbjct 14720105 TGGTATGTTTTGACAGCAGAGTCAATGTCCTCTTTGTGAATACCGACAGCAACCCTCATC 14720046 Query 112070 AACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCA 112129 ||||||| |||||| |||||| | | ||||| | | | ||| ||| | ||||| Sbjct 14720045 AACATGTGCTGTGGTCTTTCCACAATTTTCCCATCAACCTTTAAAAGGTAGGACCTCTCA 14719986 Query 112130 AGGGTTTTGAGACCAAAGTAACCAAAATCA 112159 || ||||||| ||||||||| || | ||| Sbjct 14719985 AGAGTTTTGAAGCCAAAGTAATCATAGTCA 14719956 >seq17 Length=27373735 Score = 96.9 bits (106), Expect = 4e-15 Identities = 323/500 (65%), Gaps = 7/500 (1%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || |||||||| || || | || ||||| || || || |||||||| ||||||||| Sbjct 24447999 CCTTCATCTCGAGAGATCAACTCGTTTGAAAATGTTAATCCAGGCATGAGTCCCCGCTTC 24448058 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | |||| | || |||||||| || ||||| || || ||||||||||| ||||| Sbjct 24448059 TTTAGCCAAAATATTGCGCAGAAGCTTCCAGAGAAAAATATCCCCTCCACACAGGCAAAA 24448118 Query 122797 GCAAAAAGGCGTTCGGCGAAGG--AGCGAGACTTTGCATCAAACCATTTCATTGCCCATT 122854 || | || | || ||||| | ||| || |||||| ||| | | ||||| | Sbjct 24448119 GCGATCAGCCTCTCAGCGAAAGTCTCCGA-AC----CATCAATCCACCTGAGAGCCCACT 24448173 Query 122855 TCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCAG 122914 ||||| || | | ||| || || || | |||||| | ||| || | ||||| ||| Sbjct 24448174 CAGCCTTTTTAGCCACACAAGGAACGGTATCGATGGCATGAAACAAACGATTCTTCTCAT 24448233 Query 122915 ATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTTCAT 122974 || || || || | || | ||| || | || |||| | ||| Sbjct 24448234 TGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGTACATCTCAGAGTGAATATTCTCAA 24448293 Query 122975 TATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCGCAAAAT 123034 || | ||| || | || || | || || || || |||||| || | | |||| Sbjct 24448294 TAGCGATTTGGAATCCATAAAAAGCACGAGCCTCAGCTACCTGAACTTCCTTCATAAAAC 24448353 Query 123035 TGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATGTACT 123094 | | || ||| |||| ||| || ||||| || |||||||||| || || | | Sbjct 24448354 GGCCAGCGAGATTTTCAAGAACTATACCATCAGAGGCAGCAAAGAAGGCAAGAACATGGG 24448413 Query 123095 TTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGGACAAAT 123154 | || || | ||| |||| | | ||||| | ||| | | ||||||| || | || Sbjct 24448414 TGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCCAATGGCGGAGATCTTGAGAGAGAT 24448473 Query 123155 CAACTTCTTCCGCAGTCCAA 123174 | || || || ||||||||| Sbjct 24448474 CGACCTCCTCGGCAGTCCAA 24448493 >seq5 Length=28438989 Score = 84.2 bits (92), Expect = 3e-11 Identities = 221/336 (66%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTC--- 11538 |||||| | ||| | |||||||||||| | || | || || | |||| | Sbjct 18038492 ATCAAGAACATCAGGTCTATTAGTGGCCGCCAACACTATAACACCCGA---ATTGCCTGA 18038548 Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | || |||||||| || || ||||||||||||||| | Sbjct 18038549 AAATCCATCCATTTCAGTCAACAACTGATTAATAGTCTGCTCTCTCTCATCATTTCCACC 18038608 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | |||||| | | ||| | ||||| ||||||||||||||||| || ||||| || Sbjct 18038609 TCCAAGACCAGCTCCTCTCTGCCTTCCCACGGCATCAATCTCATCAATAAATACAATGCA 18038668 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || || | ||| | ||||| | ||| | || || || || || || || Sbjct 18038669 CGGAGCCTTCGCCTTGGCTTTCTCAAACAAATCTCTCACTCTAGATGCCCCAACTCCCAC 18038728 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778 |||| ||| ||||| | | || | ||| || ||||| || || || || || Sbjct 18038729 GAACAACTCAACAAACTCCGATGCCGCGCAGGAGAAAAATGGCACTCCTGCCTCTCCAGC 18038788 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | |||| || | |||||||| || || || || Sbjct 18038789 AACTGCTCTAGCCAACAGGGTCTTCCCTGTTCCAGG 18038824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016150042400