Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 102 1e-16 seq17 91.5 2e-13 >seq2 Length=32417782 Score = 102 bits (112), Expect = 1e-16 Identities = 231/342 (68%), Gaps = 14/342 (4%) Strand=Plus/Plus Query 14114 TTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTC 14170 || || || || ||||||| ||| || || |||| ||||| |||||||| || ||| Sbjct 6732419 TTAGTTGCTGCAATGACAATGATACCAGT---GTTACCCTCAAAACCATCCATTTCTGTC 6732475 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGT 14230 || || || || | ||| ||||| | ||||||||| | |||| || ||| | Sbjct 6732476 AAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCC---ACCAATGCCAGTGCCT 6732532 Query 14231 ---TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGG 14287 ||| | || || || ||||||||||| | || || || || || |||||| | Sbjct 6732533 CTTTGCCTTCCAACAGCATCAATTTCATCTACAAATACAATGCAAGGAGCATTTTCTTTG 6732592 Query 14288 GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAA 14347 || || |||| ||| || ||||| |||||| ||||| ||||||||||| ||||| Sbjct 6732593 GCCTTTTTGAAGAGATCACGGACTCTAGAGGCACCAACACCAACAAACATCTCAACAAAC 6732652 Query 14348 TTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAG 14406 | | | | | || | || || || || || |||||| || ||||| ||| || Sbjct 6732653 TCAGAACCAG-ATATGGAGAAAAATGGAACACCAGCTTCACCGGCAATGGCCTTGGCTAG 6732711 Query 14407 GAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACC 14448 || ||||| || || ||||| || | |||||| |||| Sbjct 6732712 AAGAGTCTTTCCGGTTCCTGGAGGACCAACAAGAAGGACACC 6732753 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240 ||||||||||| ||||| |||||||| ||||||||||| || | || ||| ||| || Sbjct 14723038 ATAGATATTGGATGTGTAAGGCTCAAAACACTCATTGTTGCCAAGAATCTGGCTTGTTGA 14722979 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC 118300 || || ||||| ||||||| |||||| || | || || || | | || |||| Sbjct 14722978 AGCAGTCGGCATTGGTGCCACAAGAAGGGAATTTCTTAGTCCATTCTTCGAGATCAGTTC 14722919 Query 118301 CTTGAGAGCGTCCCAGTC 118318 | ||||||||||| || Sbjct 14722918 TCTAAGAGCGTCCCAATC 14722901 >seq17 Length=27373735 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/183 (72%), Gaps = 5/183 (3%) Strand=Plus/Plus Query 130073 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 130132 || |||||||| ||||||||||| | ||| || || || || || |||||||| || Sbjct 24448038 CCAGGCATGAGTCCCCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCAGAGAAAAAT 24448097 Query 130133 ATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATC 130191 |||||||||||||| || || || | || | |||||| |||| | | || ||| Sbjct 24448098 ATCCCCTCCACACAGGCAAAAGCGATCAGCCTCTCAGCGAAAGTCTCCGAAC----CATC 24448153 Query 130192 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 130251 || |||| | | ||||||| |||||||| | | ||| || ||||| | ||| || | Sbjct 24448154 AATCCACCTGAGAGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTATCGATGGCATG 24448213 Query 130252 AAA 130254 ||| Sbjct 24448214 AAA 24448216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618419592241640