Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 178 2e-39 >seq2 Length=32417782 Score = 178 bits (196), Expect = 2e-39 Identities = 292/417 (70%), Gaps = 8/417 (2%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 ||| ||||| || | | ||| || || || ||||||| ||||| || | | ||||| Sbjct 6732400 ATCTAGGATGTCTGCCCTATTAGTTGCTGCAATGACAATGATACCAGTGTTACCCTCAAA 6732459 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| ||||||||||| ||||||| || ||||| | ||||||||| || Sbjct 6732460 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT---CC 6732516 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| |||| | | |||| |||| || |||||||| ||||| | || || ||||| Sbjct 6732517 ACCAATGCCAGTGCCTCTTTGCCTTCCAACAGCATCAATTTCATCTACAAATACAATGCA 6732576 Query 9733 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || |||||| || || |||||||| || || | ||| || |||||||| Sbjct 6732577 AGGAGCATTTTCTTTGGCCTTTTTGAAGAGATCACGGACTCTAGAGGCACCAACACCAAC 6732636 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | | | | || | || || || ||| || |||||| | Sbjct 6732637 AAACATCTCAACAAACTCAGAACCAG-ATATGGAGAAAAATGGAACACCAGCTTCACCGG 6732695 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 ||||||| ||| ||||||||||| || || ||||| ||| | || ||| ||||| Sbjct 6732696 CAATGGCCTTGGCTAGAAGAGTCTTTCCGGTTCCTGGAGGACCAACAAGAAGGACACCTT 6732755 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 |||||| || ||| | || | ||||||| || | ||| ||||| || |||| Sbjct 6732756 TTGGAATGCGAGCCCCAACTGCAGTGAATCTCTCTGGCTTCTTGAGAAACTCAACAA 6732812 Score = 105 bits (116), Expect = 8e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 104197 ||||| | |||| || ||| ||||| ||||||| ||||||| | ||| ||| | | Sbjct 14719948 AGAGATTTTGACTATGATTACTTTGGCTTCAAAACTCTTGAGAGGTCCTACCTTTTAAAG 14720007 Query 104198 CTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATT 104257 | ||||| | |||||| |||||| ||||||| ||| | || || |||||||| Sbjct 14720008 GTTGATGGGAAAATTGTGGAAAGACCACAGCACATGTTGATGAGGGTTGCTGTCGGTATT 14720067 Query 104258 CATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 104317 || || |||||||| |||| | | |||||| || |||||| || | |||| Sbjct 14720068 CACAAAGAGGACATTGACTCTGCTGTCAAAACATACCACTTGATGTCTCAGCGCTGGTTC 14720127 Query 104318 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACC 104355 || || ||||| || || || ||||||||||| || || Sbjct 14720128 ATACATGCAACCCCTACTCTTTTCAATGCTGGAACCCC 14720165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583246079955560