Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10]
2,019 sequences; 582,117,524 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq17 104 3e-17
seq10 93.3 5e-14
seq3 91.5 2e-13
seq7 89.7 6e-13
seq5 89.7 6e-13
seq12 82.4 8e-11
>seq17
Length=27373735
Score = 104 bits (114), Expect = 3e-17
Identities = 307/466 (66%), Gaps = 12/466 (3%)
Strand=Plus/Plus
Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822
||| |||||||||||| ||||| || || ||||| | | |||||||| |||||
Sbjct 24447993 TGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGTTAATCCAGGCATGAGTCCC 24448052
Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882
|||||||| | |||||| || || |||||| ||| ||| || || || || |||||
Sbjct 24448053 CGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCAGAGAAAAATATCCCCTCCACACAG 24448112
Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA--GTC-ATCCAAGTCTGAGCC 74939
||||| |||| || | | ||||| | || ||| || ||||| | |||||
Sbjct 24448113 GCAAAAGCGATCAGCCTCTCAGCGAA---AGTCTCCGAACCATCAATCCACCTGAGAGCC 24448169
Query 74940 CATTCAGCTTTTCGTTTG--ACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCT 74997
|| ||||| ||| || | || ||| || |||||||| || || || | | ||
Sbjct 24448170 CACTCAGCCTTT--TTAGCCACACAAGGAACGGTATCGATGGCATGAAACAAACGATTCT 24448227
Query 74998 TCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCG 75057
|||| | || || |||| | || | || ||| |||| |||| || |||||
Sbjct 24448228 TCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGTACATCTCAGAGTGAATAT 24448287
Query 75058 ACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTT 75116
||| | | ||| ||| | | || |||| || ||||| || | ||| || |||||
Sbjct 24448288 TCTCAAT-AGCGATTTGGAATCCATAAAAAGCACGAGCCTCAGCTACCTGAACTTCCTTC 24448346
Query 75117 GAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGT 75176
|||| ||| ||| || | || || || || ||||| || || || || ||
Sbjct 24448347 ATAAAACGGCCAGCGAGATTTTCAAGAACTATACCATCAGAGGCAGCAAAGAAGGCAAGA 24448406
Query 75177 ACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAAT 75222
|| |||||||||| ||||||| ||| || | |||||||
Sbjct 24448407 ACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCCAAT 24448452
Score = 91.5 bits (100), Expect = 2e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 19116227 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 19116168
Query 79684 TGAGCTACGAAAGCA 79698
|||||||||||||||
Sbjct 19116167 TGAGCTACGAAAGCA 19116153
>seq10
Length=26335333
Score = 93.3 bits (102), Expect = 5e-14
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 2844015 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2843956
Query 79684 TGAGCTACGAAAGCAA 79699
||||||||||||||||
Sbjct 2843955 TGAGCTACGAAAGCAA 2843940
>seq3
Length=29412403
Score = 91.5 bits (100), Expect = 2e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 28169001 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 28168942
Query 79684 TGAGCTACGAAAGCA 79698
|||||||||| ||||
Sbjct 28168941 TGAGCTACGAGAGCA 28168927
>seq7
Length=27069033
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 24135766 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24135825
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 24135826 TGAGCTACGAAAGC 24135839
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 24135961 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24136020
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 24136021 TGAGCTACGAAAGC 24136034
>seq5
Length=28438989
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 23573102 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 23573161
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 23573162 TGAGCTACGAAAGC 23573175
>seq12
Length=31596830
Score = 82.4 bits (90), Expect = 8e-11
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 26762637 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 26762696
Query 79684 TGAGCTACGAAAGCA 79698
||||||| |||||||
Sbjct 26762697 TGAGCTATGAAAGCA 26762711
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547202189636200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |