Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq17 104 3e-17 seq10 93.3 5e-14 seq3 91.5 2e-13 seq7 89.7 6e-13 seq5 89.7 6e-13 seq12 82.4 8e-11 >seq17 Length=27373735 Score = 104 bits (114), Expect = 3e-17 Identities = 307/466 (66%), Gaps = 12/466 (3%) Strand=Plus/Plus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| |||||||||||| ||||| || || ||||| | | |||||||| ||||| Sbjct 24447993 TGCAAGCCTTCATCTCGAGAGATCAACTCGTTTGAAAATGTTAATCCAGGCATGAGTCCC 24448052 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 |||||||| | |||||| || || |||||| ||| ||| || || || || ||||| Sbjct 24448053 CGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCAGAGAAAAATATCCCCTCCACACAG 24448112 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA--GTC-ATCCAAGTCTGAGCC 74939 ||||| |||| || | | ||||| | || ||| || ||||| | ||||| Sbjct 24448113 GCAAAAGCGATCAGCCTCTCAGCGAA---AGTCTCCGAACCATCAATCCACCTGAGAGCC 24448169 Query 74940 CATTCAGCTTTTCGTTTG--ACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCT 74997 || ||||| ||| || | || ||| || |||||||| || || || | | || Sbjct 24448170 CACTCAGCCTTT--TTAGCCACACAAGGAACGGTATCGATGGCATGAAACAAACGATTCT 24448227 Query 74998 TCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCG 75057 |||| | || || |||| | || | || ||| |||| |||| || ||||| Sbjct 24448228 TCTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGACTGTACATCTCAGAGTGAATAT 24448287 Query 75058 ACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTT 75116 ||| | | ||| ||| | | || |||| || ||||| || | ||| || ||||| Sbjct 24448288 TCTCAAT-AGCGATTTGGAATCCATAAAAAGCACGAGCCTCAGCTACCTGAACTTCCTTC 24448346 Query 75117 GAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGT 75176 |||| ||| ||| || | || || || || ||||| || || || || || Sbjct 24448347 ATAAAACGGCCAGCGAGATTTTCAAGAACTATACCATCAGAGGCAGCAAAGAAGGCAAGA 24448406 Query 75177 ACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAAT 75222 || |||||||||| ||||||| ||| || | ||||||| Sbjct 24448407 ACATGGGTGATAAAGTGCTTCTCATCGGAAGTTAGGGTTTCCCAAT 24448452 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 19116227 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 19116168 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 19116167 TGAGCTACGAAAGCA 19116153 >seq10 Length=26335333 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2844015 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2843956 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 2843955 TGAGCTACGAAAGCAA 2843940 >seq3 Length=29412403 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 28169001 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 28168942 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 28168941 TGAGCTACGAGAGCA 28168927 >seq7 Length=27069033 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 24135766 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24135825 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 24135826 TGAGCTACGAAAGC 24135839 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 24135961 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24136020 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 24136021 TGAGCTACGAAAGC 24136034 >seq5 Length=28438989 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 23573102 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 23573161 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 23573162 TGAGCTACGAAAGC 23573175 >seq12 Length=31596830 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 26762637 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 26762696 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 26762697 TGAGCTATGAAAGCA 26762711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202189636200