Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq1998 187 3e-42 seq287 125 9e-24 seq151 111 2e-19 seq3 107 2e-18 seq560 93.3 5e-14 >seq1998 Length=1172 Score = 187 bits (206), Expect = 3e-42 Identities = 284/402 (71%), Gaps = 2/402 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | ||||| || | | | || || | | ||| Sbjct 401 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTA 343 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 342 TTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 283 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| ||||||||||| || || || || || | | || | || Sbjct 282 TCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCG 223 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | || || |||||||| |||||||| ||| | ||||| |||||| | ||| Sbjct 222 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAATGGTTATAC 163 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||||||| Sbjct 162 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 103 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || ||||| |||||||| ||||||||| Sbjct 102 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 43 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTAT 176547 || || || || | || || | || |||||| | ||||| Sbjct 42 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTAT 1 >seq287 Length=58314 Score = 125 bits (138), Expect = 9e-24 Identities = 174/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 176439 TTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGT 176498 ||||||||| || | |||||||||| || ||||| | ||| |||||||||| | ||| Sbjct 44655 TTACATGGGTCGTGAGTGGGAACTTAATTTTCGACTAAGTATGTGTCCTTGGATTTTTGT 44596 Query 176499 TGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCA 176558 |||||| || || | || | | || || |||||| | |||||||| | ||| | Sbjct 44595 TGCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTA 44536 Query 176559 AGGATCTTTCTCTGATGGTATGCCTCTTGGCA--TTTCAGGTACATTCAACTTTATGTTT 176616 ||| || ||| || | ||||| || || | ||| | || ||||||||||| || Sbjct 44535 GGGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAA--TATTTTCAACTTTATAATT 44478 Query 176617 GTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGT 176676 |||||| | || ||||||||||| || ||||||||||| || || | || ||| ||| Sbjct 44477 GTATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATATTAGGCGTAATTGGT 44418 Query 176677 GT 176678 || Sbjct 44417 GT 44416 Score = 109 bits (120), Expect = 7e-19 Identities = 203/295 (69%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 176369 TTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGT---ATTCCACTTCCTTA 176425 |||| |||||| | ||||||| | || || |||| |||| |||| || |||| Sbjct 18177 TTGATGAATGGTTATACAATGACGATCCTTAAGAACTAATTGTTCAATTCTTTTTACTTA 18118 Query 176426 TCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTC 176485 | || || |||||| || | | ||| |||||| || |||| | ||| ||| Sbjct 18117 GTG-TAGCTTG--TTACATAGGTGGTGAGTGGCAACTTAATTTTTGACTGAGTATGTGTC 18061 Query 176486 CTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCT 176545 ||||||| | ||||||||| || || | || | | | || |||||| | ||| Sbjct 18060 CTTGGATTTTTGTTGCATATTCAGCTCGTGTTGCAACTACTATTATTGTTTTCTTGATCT 18001 Query 176546 ATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCA 176605 ||||| | || | |||| ||| ||| || |||||||||| || | | | || |||| Sbjct 18000 ATCCAATTGGCTAGGGATGTTTTTCTTATAGTATGCCTCTAGGAAGCTTTGATATTTTCA 17941 Query 176606 ACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATAT 176660 |||||| | |||||||| | | ||||||||||| || || |||||||| || || Sbjct 17940 ACTTTAGGATTGTATTCTAGACTGAGCACAACATCCTTATACACCCATTTCACAT 17886 >seq151 Length=113734 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 176455 TGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 176514 ||| |||||| || ||| | ||| |||||||||| | ||||||||| || || | Sbjct 4843 TGGCAACTTAATTTTTGACCGAGTATGTGTCCTTGGATTTTTGTTGCATATTCAGCTCGT 4784 Query 176515 GTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGAT 176574 || | | || || |||||| | |||||||| | ||| | ||| ||| ||| || Sbjct 4783 GTTGCAACTGCAATTATTGTTTTCTTGATCTATCCAATTGGTTAGGGAAGTTTTTCTTAT 4724 Query 176575 GGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCAC 176634 |||||||||| || | || |||| |||||||||||| |||||||| | | ||||| Sbjct 4723 AGTATGCCTCTAGGAAGTTTTGGTATTTTCAACTTTATGATTGTATTCTAGACTAAGCAC 4664 Query 176635 AACATTCTAATGCACCCATTCCATAT 176660 ||||| || | |||||||| || || Sbjct 4663 AACATCCTTGTACACCCATTTCACAT 4638 >seq3 Length=29412403 Score = 107 bits (118), Expect = 2e-18 Identities = 176/245 (72%), Gaps = 9/245 (4%) Strand=Plus/Plus Query 176438 CTTACATGGGACGCCAATGGGAA--CTTAGTTACAGACTAGGCATGCGTCCTTGGATCTG 176495 |||||||||| ||| | |||||| | ||||| | |||| |||| ||||||||| Sbjct 11375327 CTTACATGGGTCGCAAGTGGGAAAACCTAGTTTTTGTCTAGTTATGCTTCCTTGGATTGT 11375386 Query 176496 TGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCG-TCTATCCATTCG 176554 ||||||||| || | ||| ||| |||| | | || ||| | | | |||||||| | | Sbjct 11375387 TGTTGCATATTCAGTACC--TAT-TGCA-CTACTGCTGTTGTTATTGATCTATCCAATTG 11375442 Query 176555 GTCA-AGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATG 176613 ||| || | |||| || ||| |||||||| | || || || |||||||||||||| Sbjct 11375443 ATCAGAGAAGCTTT-TCAAATGTTATGCCTCCCGAAATCTCTAGTGCATTCAACTTTATG 11375501 Query 176614 TTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCA 176673 | | |||| |||| | |||||||| || || ||||||| || || | || ||||| Sbjct 11375502 ATCGCATTCTAAGCTAATCACAACATCCTTATTTACCCATTTCACATATTAGGCGTAGCT 11375561 Query 176674 GGTGT 176678 |||| Sbjct 11375562 AGTGT 11375566 >seq560 Length=20368 Score = 93.3 bits (102), Expect = 5e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 176534 TTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTT 176593 ||||| | |||||||| | ||||| ||| || ||||||||||||||||| || || | Sbjct 20275 TTTTCTTGATCTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCT 20334 Query 176594 CAGGTACATTCAACTTTATGTTTGTATTCCAAGC 176627 | ||||| |||||||||||| |||||||||| || Sbjct 20335 CTGGTACTTTCAACTTTATGATTGTATTCCAGGC 20368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603479169310080