Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq1998 156 5e-33 seq17 125 9e-24 seq14 100 4e-16 seq4 100 4e-16 seq287 96.9 4e-15 seq560 87.8 2e-12 >seq1998 Length=1172 Score = 156 bits (172), Expect = 5e-33 Identities = 261/374 (70%), Gaps = 5/374 (1%) Strand=Plus/Minus Query 189705 TTGGTTGGTTTGGTGTACTCATGATTCCATGCTTGCTCG-CAGCAGCAGCATGCTTCGTT 189763 |||| ||||||||||| | ||||| || | ||| | | | ||| | | || || Sbjct 395 TTGGATGGTTTGGTGTTTTGATGATCCC-TACTTTATTGACCGCAACTTCTGTATTTATT 337 Query 189764 GTTGCATTTATTGCAGCACCACCTGTAGACATTGATGGCATCAGAGAGCCAGTTGCAGGT 189823 | || || ||||| || || || ||||| |||||||| || | || || ||| | || Sbjct 336 ATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 277 Query 189824 TCACTTCTCTATGGTAACAACATCATTTCTGGTGCTGTTGTACCTTCATCAAATGCTATT 189883 || || || ||||| ||||| || ||||||||||| || | ||| | || ||||| Sbjct 276 TCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATA 217 Query 189884 GGTCTACACTTCTACCCAATCTGGGAAGCAGCAACAGTAGATGAGTGGCTTTACAATGGT 189943 ||| | || || |||||||| |||||||| ||| | || ||||| ||| | |||||||| Sbjct 216 GGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGC 157 Query 189944 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 190003 |||||||| || | | | | |||||| | ||||| | | |||||||| | Sbjct 156 GGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGT 97 Query 190004 CAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCA 190063 |||||||| | | | | || |||||| | |||||||| |||||| |||||||| Sbjct 96 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCT 37 Query 190064 CCAGTATCTGCAGC 190077 || || |||||| Sbjct 36 CCTGT---TGCAGC 26 >seq17 Length=27373735 Score = 125 bits (138), Expect = 9e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 182485 AATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGC 182544 ||||| || | || ||||| |||||||| || || | || || |||||||| | || Sbjct 3673020 AATGTTACATTCAGTAAAAATTTATGATACATGTATAAGGTGTACTCAATGTGTCCAAGC 3673079 Query 182545 TTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGC 182604 || || ||||||||||||||| | | || |||||| || ||| | ||||||||||| Sbjct 3673080 CTGCCCCACAGATGTATTAGAAATGATACATTAGGATGGATGTAAATCCAAGCAAATTGC 3673139 Query 182605 TTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTAC 182664 ||| | || ||||| | || ||||| || | || |||||||||| | || | ||| | Sbjct 3673140 TTCTGCTCCAAGAACAAAAGACTGTGTCGGTTATACGAGATGTGAATCCGCCTATCCAAT 3673199 Query 182665 AGACTTTTTAAGTATTCGTGTT 182686 ||| || |||||| |||| ||| Sbjct 3673200 AGATTTCTTAAGTGTTCGAGTT 3673221 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 188637 ACCTGTCACAGTTCAGTATCCTTATGAAAAATTAATACCCTCAGAGAGATATAGAGGGAG 188696 || ||| || ||||| |||||||||||||||||||| | || ||| | | | || | Sbjct 3666271 ACTTGTAACTGTTCAATATCCTTATGAAAAATTAATCACATCGGAGCGTCTTCGTGGTCG 3666330 Query 188697 GATACACTATGAGTTTGATAAATGTATTGCTTGTGAAGTATGTG 188740 || || | ||| ||||||||||| ||||||||||||||| ||| Sbjct 3666331 AATTCATTTTGAATTTGATAAATGCATTGCTTGTGAAGTACGTG 3666374 >seq14 Length=24855542 Score = 100 bits (110), Expect = 4e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 191486 ACACAGGATGAGGAAACTTATTCTATGATCACTGCAAACAGATTCTGGTCACAGATATTT 191545 || || | ||| ||||||||||| ||| |||| || ||| | || | || || || ||| Sbjct 952205 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTAGTTTCAAATCTTT 952146 Query 191546 GGTATTGCATTCTCTAACAAAAGATTTCTACACTTCTTGATGTTGTTTGTTCCTGTAATG 191605 || |||| || || | ||| | |||| ||||| ||||| ||||| || |||| | Sbjct 952145 GGGGTTGCTTTTTCCGATAAACATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACG 952086 Query 191606 GGAATGTGGACATCATCAATAGGTATTGTAGGTCTTGCACTTAACTTAAGAGCATATGAT 191665 || | |||| | | || | || ||||| | || || ||| | || ||||| Sbjct 952085 GGTTTATGGATGAGCGCTCTCGGATTAGTCGGTCTGACTCTAAATTTACGTGCCTATGAC 952026 Query 191666 TTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTATACTAAG 191725 || || ||||| | || | ||||||||||| || || ||||| || ||||| | ||| Sbjct 952025 TTCGTTTCTCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACATTAAA 951966 Query 191726 AACATTCT 191733 || ||||| Sbjct 951965 AATATTCT 951958 >seq4 Length=28735499 Score = 100 bits (110), Expect = 4e-16 Identities = 122/165 (74%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 186203 AGAATGCTAC-AGCACAAAGAAGCAATTATAAGTCACTTAAGTTGGGTATCACTATTCCT 186261 |||||| || | || |||||||| || ||| || |||||||||| || || || Sbjct 28554340 AGAATGTTAAGACCATAAAGAAGCTATCATATCCCATTTAAGTTGGGCCAGTCTCTTTCT 28554399 Query 186262 TGGATTCCATACTTTAGGAATCTATGTCCATAATGATGTAGTAATGGCATTTGGTCATCC 186321 |||||||||| |||| || | ||||| ||||||||||| | | || |||||| ||| Sbjct 28554400 TGGATTCCATTCTTTGAGACTTTATGTTCATAATGATGTCATGCTTGCTTTTGGTACTCC 28554459 Query 186322 TGAGAGACAGATATTAATTGAACCTATATTTGCACAGTGGATACA 186366 |||| | | || ||||| ||||| ||| | || || |||||||| Sbjct 28554460 GGAGAAATAAATCTTAATCGAACCCATAATCGCCCAATGGATACA 28554504 >seq287 Length=58314 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 189992 TACATGGGAAGACAGTGGGAA-TTATCATACAGACTAGGTATGAGACCTTGGATCTGTGT 190050 |||||||| | |||||||| ||| | | ||||| ||||| | |||||||| | ||| Sbjct 44654 TACATGGGTCGTGAGTGGGAACTTAATTTTC-GACTAAGTATGTGTCCTTGGATTTTTGT 44596 Query 190051 TGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCA 190110 ||| |||||||| | || | | || || || ||| | | || ||| ||||| | Sbjct 44595 TGCATATTCAGCTCATGTTGCAACTGCTATTATGGTTTTCTTGATCTATCCAATTGGTTA 44536 Query 190111 GGGTTCATTCTCTGATGGTATGCCTTTAGGTATCTCAGGTACATTCAACTTCATGTTTGT 190170 ||| || ||| || | ||||| |||| | || || |||||||| || |||| Sbjct 44535 GGGAAGCTTTTCTAATAGCATGCCCCTAGGAACCTTTAATATTTTCAACTTTATAATTGT 44476 Query 190171 ATTCCAAGCAGAACATAATATCCTTATGCACCCATTCCATAT 190212 |||| | || || || || ||||||||||||||||| || || Sbjct 44475 ATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 44434 >seq560 Length=20368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 76/93 (82%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 190088 TTCCTTG-TATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCTTTAGGTATCTC 190146 || |||| | || ||| |||||||||| || ||||||||||||||| |||| ||||| Sbjct 20276 TTTCTTGATCTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTC 20335 Query 190147 AGGTACATTCAACTTCATGTTTGTATTCCAAGC 190179 ||||| |||||||| ||| |||||||||| || Sbjct 20336 TGGTACTTTCAACTTTATGATTGTATTCCAGGC 20368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631411264356040