Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq17 86.0 4e-12 >seq17 Length=27373735 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || || || || || ||| || || | || ||||| |||| | Sbjct 16111644 ATGCAGATCTTCGTTAAGACCCTCACCGGAAAAACCATCACTCTCGAGGTCGAGAGCAGC 16111703 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| |||||| ||||| || ||||||||| | || || | Sbjct 16111704 GACACCATCGACAAC--GTCAAAGCCAAAATCCAGGATAAAGAAGGTATCCCACCAGACC 16111761 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||||||||| ||| | || |||| || | |||| | ||||||| Sbjct 16111762 AGCAGCGTCTCATCTTTGCCGGAAAGCAACTTGAGGACGGCCGTACCTTGGCTGATTACA 16111821 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| ||| ||| | || | || | ||| | ||||| ||| Sbjct 16111822 ACATCCAAAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGTGGTGGC 16111871 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| | || || || |||||| |||| ||||| |||| | Sbjct 16111872 ATGCAGATCTTTGTGAAAACCTTGACCGGAAAGACTATTACCCTTGAGGTCGAGAGCAGC 16111931 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||| ||||| |||| || | Sbjct 16111932 GACACCATTGACAAC--GTCAAGGCTAAGATTCAGGACAAGGAAGGAATTCCCCCAGATC 16111989 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || |||||||||||||| |||| |||| |||| || ||||||| | Sbjct 16111990 AGCAAAGGCTTATCTTTGCCGGAAAACAGCTGGAGGACGGCCGCACATTAGCCGATTATA 16112049 Query 27968 ACATCCAAAAAGA 27980 |||| || || || Sbjct 16112050 ACATTCAGAAGGA 16112062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355853643449613