Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manihot_20esculenta_20[genbank_20GCA_5F001659605.1_202016-06-10] 2,019 sequences; 582,117,524 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq17 102 7e-17 seq10 87.8 2e-12 >seq17 Length=27373735 Score = 102 bits (112), Expect = 7e-17 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| || || ||||| || | || || |||| ||||| || || || ||||| Sbjct 16111835 CTCCTTTTGGATGTTGTAATCAGCCAAGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAA 16111776 Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 || |||||||||||||| |||||| | | ||||| ||| |||||| ||||| || Sbjct 16111775 GATGAGACGCTGCTGGTCTGGTGGG-ATACCTTCTTTATCCTGGATTTTGGCTTTGA-CG 16111718 Query 39212 TCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | | | || ||||| ||| || || | ||||| ||||||| || || || ||| Sbjct 16111717 TTGTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTTTTTCCGGTGAGGGTCTTA 16111658 Query 39271 ACAAAGATTTGCATCTTTA 39289 || ||||| ||||||| || Sbjct 16111657 ACGAAGATCTGCATCTGTA 16111639 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || ||||||||||| | ||| || |||| || |||||||| || ||||| Sbjct 16112062 TCCTTCTGAATGTTATAATCGGCTAATGTGCGGCCGTCCTCCAGCTGTTTTCCGGCAAAG 16112003 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 ||||| | ||||| || | ||| | | || |||||| || || |||| ||| Sbjct 16112002 ATAAGCCTTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGAATCTTAGCCTTGA-CGTT 16111944 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || ||||| ||| || || | || ||| | ||||| |||| ||||| || Sbjct 16111943 GTCAATGGTGTCGCTGCTCTCGACCTCAAGGGTAATAGTCTTTCCGGTCAAGGTTTTCAC 16111884 Query 39273 AAAGATTTGCAT 39284 |||||| ||||| Sbjct 16111883 AAAGATCTGCAT 16111872 >seq10 Length=26335333 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| || || |||| ||| | || | |||| ||||| || || || || || Sbjct 4732544 CTCCTTTTGCATGTTGTAATTGGCCAAGGTACAGCCGTCCTCAAGTTGCTTTCCGGCGAA 4732485 Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 || |||||||||||||| |||||| | | ||||||||| |||||| ||||| Sbjct 4732484 GATGAGACGCTGCTGGTCTGGTGGG-ATTCCTTCTTTGTCCTAGATTTTGGCTTTGATGT 4732426 Query 39212 TCGCCACCGTATCGCTCGACTCCACGTCCACCG-TGATACTTTTTCCCGTCAGCGTTTTA 39270 | | | || ||||| |||| || || | | | || ||||||| || || || ||| Sbjct 4732425 TGTCGATGGTGTCGCTGCACTCGACCTCAAGAGTTAATGGTTTTTCCAGTGAGAGTCTTA 4732366 Query 39271 ACAAAGATTTGCATCTTTA 39289 || ||||| ||||||| || Sbjct 4732365 ACGAAGATCTGCATCTGTA 4732347 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || |||||||||||||| ||||| | || ||||||||||| || || || Sbjct 23447071 CTCCTTCTGGATGTTATAATCGGCAAGGGTTCGGCCATCTTCAAGCTGTTTTCCGGCGAA 23447130 Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 || || | |||||| || |||||| | || || ||||| ||| || |||| Sbjct 23447131 GATCAGCCTCTGCTGATCAGGTGGG-ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGT 23447189 Query 39212 TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| |||||| || | |||||| | || || || || ||||| | Sbjct 23447190 TATCAATTGTGTCGGAACTCTCCACCTCAAGAGTGATAGTCTTGCCGGTGAGGGTTTTGA 23447249 Query 39272 CAAAGATTTGCAT 39284 ||||||| ||||| Sbjct 23447250 CAAAGATCTGCAT 23447262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429535030359347